Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_028765.1 Length=142348 Score E Sequences producing significant alignments: (Bits) Value seq5373 96.9 3e-15 seq57423 91.5 1e-13 >seq5373 Length=95907 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/228 (71%), Gaps = 5/228 (2%) Strand=Plus/Plus Query 125990 CCTGATAGTGGAGACCCTGTTAAGATTATTTGTGGAGACCCTGACGCAGA--TACTGAGT 126047 ||||| ||| || ||||| || ||||| ||||| || ||||| ||||| || ||| Sbjct 19995 CCTGACTCTGGTGATCCTGTGAAAATTATCTGTGGCGATCCTGAAGCAGAGCTAGATAGT 20054 Query 126048 AT-GAACGTAAAGGTGCTGTAGAGGTGCTT-TGGGATACTTTTGGAGGTACTGAAACTGA 126105 | ||||||||| || | || || ||||| | |||||| || || ||||| | Sbjct 20055 CCCGCTTATAAAGGTGCAGTGCAA-TGTTTATGGGAAATTTTTGGCGGCACAGAAACAGC 20113 Query 126106 AAAAGGATATAAAGTACTAGATGAGCATGTAGGATTAATTTATGGGGACTCTATTAACTA 126165 |||| ||||||||||| |||||| ||| || || || ||||| ||||| |||| | Sbjct 20114 TCAAGGCTATAAAGTACTGAATGAGCGTGTCGGTTTGATCTATGGTGACTCGATTACCCT 20173 Query 126166 TGAGCGTGCACATCAAATTTGTGAAGGATTAAAAGAAAAAGGTTTTGC 126213 || |||||||| | || | |||| || ||| ||||| ||||| Sbjct 20174 AGAACGTGCACAAAATATCTTAAAAGGTTTGGAAGCCAAAGGCTTTGC 20221 >seq57423 Length=6334 Score = 91.5 bits (100), Expect = 1e-13 Identities = 215/316 (68%), Gaps = 13/316 (4%) Strand=Plus/Minus Query 125990 CCTGATAGTGGAGACCCTGTTAAGATTATTTGTGGAGACCCTGACGCAGATACTGAGTAT 126049 ||||| ||| || || || || ||||| ||||| || ||||| ||||| || || Sbjct 5788 CCTGACTCTGGTGATCCAGTGAAAATTATCTGTGGTGATCCTGATGCAGAGCTAGA-TAG 5730 Query 126050 GAACG----TAAAGGTGCTGTAGAGGTGCTT-TGGGATACTTTTGGAGGTACTGAAACTG 126104 || ||||||||| || | || || ||||| | |||||| || || ||||| Sbjct 5729 CCCCGCTTATAAAGGTGCAGTGCAA-TGTTTATGGGAAATTTTTGGCGGCACGGAAACAA 5671 Query 126105 AAAAAGGATATAAAGTACTAGATGAGCATGTAGGATTAATTTATGGGGACTCTATTA-AC 126163 |||| ||||||||||| | |||| ||| || ||||| ||||| ||||| |||| | Sbjct 5670 CTCAAGGCTATAAAGTACTCAACGAGCGTGTTGGTTTAATCTATGGTGACTCGATTACTC 5611 Query 126164 TATGAGCGTGCACATCAAATTTGTGAAGGATTAAAAGAAAAAGGTTTTGCAAGTATTAAC 126223 || || ||||| || | || | |||| || ||| ||||| ||||| | ||| Sbjct 5610 TA-GAACGTGCGCAAAATATCTTAAAAGGCTTGGAAGCCAAAGGCTTTGCTTCGAATAAT 5552 Query 126224 GTTGTATTAGGTGTAGGTAGTTTCTCTTAC--CAATTTAATACTCGTGATACTCATGGCT 126281 | || || ||| | ||||| | | ||| | ||||| |||||||| || ||| | Sbjct 5551 CTAGTCTTTGGTATCGGTAGCTATACCTACAACTATTTA--ACTCGTGACACCTTTGGTT 5494 Query 126282 TTGCAATCAAAGCAAC 126297 |||| | ||||| || Sbjct 5493 TTGCCGTAAAAGCCAC 5478 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 454359639012480