Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_028768.1 Length=49714 Score E Sequences producing significant alignments: (Bits) Value seq68 89.7 2e-13 seq5373 84.2 7e-12 >seq68 Length=444459 Score = 89.7 bits (98), Expect = 2e-13 Identities = 72/87 (83%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 36080 CTGGTCGGAGTACTAGGATTCGAACCTAGGACCCTCTGCTCCCAAAGCAGATGCGCTACC 36139 |||||||||| ||||||||||||| ||||| |||||||| |||||| ||||||||| Sbjct 223240 CTGGTCGGAGCGAGAGGATTCGAACCTCCGACCCCCTGCTCCCGAAGCAGGTGCGCTACC 223299 Query 36140 TGACTGCGCTACACTCCGAAGGTGCCG 36166 | ||||||||| |||||| ||| || Sbjct 223300 AGGCTGCGCTACGCTCCGACCGTGGCG 223326 >seq5373 Length=95907 Score = 84.2 bits (92), Expect = 7e-12 Identities = 66/79 (84%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 36081 TGGTCGGAGTACTAGGATTCGAACCTAGGACCCTCTGCTCCCAAAGCAGATGCGCTACCT 36140 ||||||||| | ||||||||||||||| ||||| ||| ||||||| ||| ||| ||||| Sbjct 61887 TGGTCGGAGCAGTAGGATTCGAACCTACGACCCCCTGGTCCCAAACCAGGTGCACTACCA 61946 Query 36141 GACTGCGCTACACTCCGAA 36159 | ||| |||| ||||||| Sbjct 61947 GGCTGTGCTATGCTCCGAA 61965 Score = 82.4 bits (90), Expect = 2e-11 Identities = 65/78 (83%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 36081 TGGTCGGAGTACTAGGATTCGAACCTAGGACCCTCTGCTCCCAAAGCAGATGCGCTACCT 36140 ||||||||| | ||||||||||||||| ||||| ||| ||||||| ||| ||| ||||| Sbjct 24977 TGGTCGGAGCAGTAGGATTCGAACCTACGACCCCCTGGTCCCAAACCAGGTGCACTACCA 25036 Query 36141 GACTGCGCTACACTCCGA 36158 | ||| |||| |||||| Sbjct 25037 GGCTGTGCTATGCTCCGA 25054 Score = 82.4 bits (90), Expect = 2e-11 Identities = 65/78 (83%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 36081 TGGTCGGAGTACTAGGATTCGAACCTAGGACCCTCTGCTCCCAAAGCAGATGCGCTACCT 36140 ||||||||| | ||||||||||||||| ||||| ||| ||||||| ||| ||| ||||| Sbjct 62228 TGGTCGGAGCAGTAGGATTCGAACCTACGACCCCCTGGTCCCAAACCAGGTGCACTACCA 62287 Query 36141 GACTGCGCTACACTCCGA 36158 | ||| |||| |||||| Sbjct 62288 GGCTGTGCTATGCTCCGA 62305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 158622970665632