Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_028770.1 Length=59878 Score E Sequences producing significant alignments: (Bits) Value seq103 132 2e-26 seq1 84.2 8e-12 >seq103 Length=407632 Score = 132 bits (146), Expect = 2e-26 Identities = 235/334 (70%), Gaps = 18/334 (5%) Strand=Plus/Plus Query 5932 CGGCCCGCCGTTGAGGCAGATGAGAAGCTCGGCTTCCTGCCCGGCA--CTGTGGACGAGA 5989 || || || || ||||| | |||||||||||||||||||||||| |||| | |||| Sbjct 107796 CGCCCGGCGGTGGAGGCCGGCGAGAAGCTCGGCTTCCTGCCCGGCGACCTGTCG--GAGA 107853 Query 5990 AGATGGCACCCTACCTCACCCCGATGCTGGACGCGGTGATCGACCTGGTCGGCC-CGACG 6048 |||| |||||||| |||| | |||||| | ||| || ||||| |||| Sbjct 107854 AGATCAATCCCTACCTGCGCCCGCTCTACGACGCGCTCTACGAAATGCTCGGCTTCGACC 107913 Query 6049 A--TGACGAAGCGCCTCCTCGAGTCGCGCCAGCTG---GAGGTCGCCCCGCTGGCCTACA 6103 || | |||| | ||||| |||||| || |||||||| ||||||||||||| Sbjct 107914 GCGTGGCCAAGC---TGATCGAG---CGCCAGGTGATCGAGGTCGCGCCGCTGGCCTACA 107967 Query 6104 TGCGAGGCCGGACGTTCAACGACACGTACATCGTCGCTGACGAGATGCAGAACGCCAC-C 6162 |||| || || ||| ||||| | | | |||| || |||||| |||||| |||| | Sbjct 107968 TGCGCGGGCGCACGCTCAACCATGCCTTCATCATCCTCGACGAGGGTCAGAACACCACGC 108027 Query 6163 CCGCGCCAGACCGCGCTGCTGGTGACCCGCCTGGGCTTCGGGACGAAGGCCGTCCTGAAC 6222 ||| | |||| | || | |||||||||| |||| ||| | ||||| || | | | Sbjct 108028 CCGAG-CAGATGAAGATGTTCCTGACCCGCCTCGGCTACGGCTCCAAGGCGGTGATCACC 108086 Query 6223 GGTGACCCGGCCCAGTGCGACCTGCCGCCCGGCA 6256 || ||| ||||| ||||||||||| ||||| Sbjct 108087 GGCGACATCACCCAGGTCGACCTGCCGCGCGGCA 108120 >seq1 Length=1655743 Score = 84.2 bits (92), Expect = 8e-12 Identities = 136/195 (70%), Gaps = 3/195 (2%) Strand=Plus/Minus Query 32691 CTGATCGTG---GACGAGTCCTCCATGGTGGACGAGCAGGTGGGAGAAGACCTGCTGTCC 32747 ||||||||| |||||| || ||||| | |||| || ||| |||||| || | Sbjct 176633 CTGATCGTGCTCGACGAGGTGTCGATGGTCGGCGAGGAGATGGCGCGCGACCTGATGAGC 176574 Query 32748 TTCGGGGTGCCGATCCTCGCCCTGGGCGACCCCGCCCAGCTGCCGCCCGTCATGGGGGCC 32807 ||||| ||||||||||| || ||||| || | |||| ||||||| || ||| | Sbjct 176573 TTCGGCAAGCCGATCCTCGTGCTCGGCGATCCTGGCCAGTTGCCGCCGATCCGGGGCGAA 176514 Query 32808 GGGTTCTTCACCAAGCAGAAGGCCGACTTCCTCCTGACCGACATCCACCGACAGGCCCGC 32867 || ||||||| | || | ||| | | |||||||| |||||||| |||||| | Sbjct 176513 GGCGCCTTCACCCGCGACGAGCCGGACGTGATGCTGACCGAGATCCACCGCCAGGCCGCC 176454 Query 32868 GACAACCCGATCATC 32882 || | | | |||||| Sbjct 176453 GAGAGCGCCATCATC 176439 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 191078157754880