Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_028820.1 Length=162101 Score E Sequences producing significant alignments: (Bits) Value seq5 131 2e-25 seq51 87.8 2e-12 >seq5 Length=869209 Score = 131 bits (144), Expect = 2e-25 Identities = 316/469 (67%), Gaps = 12/469 (3%) Strand=Plus/Minus Query 140122 GGGCTGAACAACGTGATGTAATCGTTTTTAATCAGACGTTCAATCATGAGGTCGTTAATT 140181 ||||||||||| ||||| || || | ||||||||| || | | ||| ||| ||||| Sbjct 711216 GGGCTGAACAAGGTGATATAGTCATCTTTAATCAGGCGCTGATACATCAGGCGGTTAAAC 711157 Query 140182 TGAACACCATAATCTAGGTGGCGAATACGGTTTTCATCAACACCTTTATTGTTCTTCAGT 140241 || || ||||| || || || | | ||||| || || ||||| || || |||||| Sbjct 711156 TGCACGCCATAGTCCAGATGCCTTACCCGGTTCTCTTCTACACCGCGGTTATTTTTCAGT 711097 Query 140242 ACGAGCAGGTTTTCTACTTCAAGATGCCAAATCGGATAGTACAAAGTAGCTGCGCCACCG 140301 || ||||| ||| ||||| |||||||| | || ||| ||| || || || ||||| Sbjct 711096 ACCAGCAGCGATTCCACTTCCAGATGCCACAAGGGGTAGAACAGGGTGGCGGCACCACCA 711037 Query 140302 CGAATGCCGCCTTGAGAACAAGATTTAACAGAAG-CT--AAGTGAGTTTTCCAGAATGGA 140358 || | |||||||| || || ||| || | | || || || || | || || Sbjct 711036 CGCACACCGCCTTGCGAGCAGCTTTTTACTGCGGTCTGGAAATG---CTTATAAAACGGG 710980 Query 140359 ATAACGCCTGTATGACGAACTTCACCAGCGCCAATCTTAGAACCTTCAGCACG-ATACAT 140417 ||| ||| |||||| |||| ||| | || |||| ||| || |||| Sbjct 710979 ATACAGCCAGTATGAAAGGCTTCGCCATTACGGATTGGGCTACCTAAAGCGCGAATAC-G 710921 Query 140418 TCCAGCGTTAACACCAATACCGGCACGTTTGCTGATA--TATTTGATGATTGCTTTGTTT 140475 || ||||||| ||||||||| || || ||| || | ||||| | || || || Sbjct 710920 GCCTGCGTTAATACCAATACCTGCGCG-CTGC-GACACGTATTTTACAATGGCACTGGAG 710863 Query 140476 ACTGCATTAATACTGTCAAGACTATCGCCGCCTTCAATAACAACGCAAGAACTGAACTGG 140535 ||||| || || || || || || | ||||| | ||||| || |||||||| Sbjct 710862 GTGGCATTGATCGAATCCAGGCTGTCACCACACTCAATCAGTACGCAGGAGCTGAACTGA 710803 Query 140536 CGAGTCGGAGTACGTACACCGGCCATAATTGGAGTAGGCAGAGAAATCT 140584 || || || ||||| || || | |||||| || || ||||| ||||||| Sbjct 710802 CGGGTTGGGGTACGCACGCCCGACATAATAGGTGTCGGCAGTGAAATCT 710754 >seq51 Length=473680 Score = 87.8 bits (96), Expect = 2e-12 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 67178 TGGTGGCCCTTACTGGATTTGAACCAGTGACCAATCGATTATGAGTCGACTGCTCTATCC 67237 ||||||||| ||||| | ||||||| |||| |||||||||||||||| ||||||| || Sbjct 469304 TGGTGGCCCCAGCTGGACTCGAACCAGCGACCGATCGATTATGAGTCGAGTGCTCTAACC 469245 Query 67238 ATCTGAGCTAAAGGGCCT 67255 | |||||||| |||||| Sbjct 469244 AACTGAGCTATGGGGCCT 469227 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517426830944160