Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_028827.1 Length=50165 Score E Sequences producing significant alignments: (Bits) Value seq363 214 6e-51 seq1 147 7e-31 seq27787 134 4e-27 seq7 98.7 3e-16 seq53823 95.1 4e-15 >seq363 Length=289854 Score = 214 bits (236), Expect = 6e-51 Identities = 282/386 (73%), Gaps = 10/386 (3%) Strand=Plus/Plus Query 40035 AGGGCTTGTCCAGCACGCGGGCCGCGTCCTTCATCGCGT--TGCGC-GCCTTGATCCGGC 40091 ||| |||| || ||||||| ||| |||| || | || | ||| ||| || | || Sbjct 188344 AGGACTTGCCCTGCACGCGCGCCACGTCGCGCACCACGGCCTTCGCCGCCATGGT---GC 188400 Query 40092 CGAAGGTCCCGATCTGTGCGACCTTGTCGGCCCCGTACTTCTCGGTGACGTACCGGATGA 40151 ||||||| |||||| | ||| ||| ||||| | | ||| |||||| ||||| Sbjct 188401 CGAAGGTGATGATCTGCGACACCGCTTCGCGGCCGTAGTGCCCGGCCACGTACTCGATGA 188460 Query 40152 CCTCGCCGCGACG--CCGGTCATCGAAGTCGATGTCAACGTCGGGCATGGACACGCGCTC 40209 | | |||| | || || |||||||||||| | ||||||||||||||||||||| Sbjct 188461 CGCGGTCGCGCCCTTCCATGCA--GAAGTCGATGTCGAAGTCGGGCATGGACACGCGCTC 188518 Query 40210 GGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGCTCCAGTGGATCGAGGTCGGTGATCCC 40269 ||| || ||||| |||||||| | || ||| || | ||||| ||||||||||| Sbjct 188519 GGGATTGAGGAAGCGCTCGAACAGCAGGTCGTACTTGATCGGATCCAGGTCGGTGATGAA 188578 Query 40270 GAGGCAGTAGGCGACCAGCGAACCGGCTGCCGAGCCTCGCCCAGGACCGACCCACACGCC 40329 || |||| || |||||||| ||||| | || || || || || || ||| |||||| Sbjct 188579 CAGCGAGTAAGCCACCAGCGAGCCGGCGCCGGAACCGCGACCCGGCCCCACCGGCACGCC 188638 Query 40330 GTTCTCCTTGGCCCAGCCGATGAAGTCGGCGACGACCAGGAAGTAGGACGGGAAGCCCAT 40389 ||| | ||||||||||| ||||||||| ||||| |||||||||| ||| || ||||| Sbjct 188639 GTTGTTCTTGGCCCAGCGGATGAAGTCCATGACGATCAGGAAGTAGCCCGGAAAACCCAT 188698 Query 40390 CTGGATGATCATGTCGATCTCGTACT 40415 |||| |||| |||| || |||| ||| Sbjct 188699 CTGGTTGATGATGTTGAGCTCGAACT 188724 Score = 187 bits (206), Expect = 8e-43 Identities = 538/811 (66%), Gaps = 44/811 (5%) Strand=Plus/Plus Query 38936 GGCGGCAGGACCCGCAGGCCCATG---CGCCGCGCCTCGCCGAGGTACGTGGCCATCTTG 38992 |||||| ||| | |||||||||| || | | ||||| |||| || | |||||| Sbjct 187263 GGCGGCCGGATCTTCAGGCCCATGGCGCGACACTCCTCGATGAGG---GTCACGATCTTG 187319 Query 38993 TTCTTGTCGTCGCCCACCGAGGTGAGCACGGCCGCCATGTACTCGGCCGGGTAGTGCGTC 39052 | ||| | | |||| | ||||| ||||||||| ||||||||||||| ||| | Sbjct 187320 TCGGTGTTGGCCATTTCCGACGACAGCACCGCCGCCATGAACTCGGCCGGGTAATGCACC 187379 Query 39053 TTCAGGTACGCCGTGCGGTAGGCGATGAGCCCGTACGCCGCAGAGTGCGCCTTGTTGAAG 39112 || || | || || |||| | | ||| |||| || || ||||||| |||||||||| Sbjct 187380 TTGAGCCAGGCGGTCTGGTACGACACCAGCGCGTAGGCGGCCGAGTGCGACTTGTTGAAG 187439 Query 39113 GCGTACCCGGCGAAGGGTACGAGCACGTCCCACA--CCGCCTGGATGGCGCTGTCCGAGT 39170 |||| |||||||| | | | ||| | | ||||| | ||| | | ||| Sbjct 187440 CCGTAGCCGGCGAACTTCTCCATGAGGTCGAAGATGCCGCCGGCCTGGTCCGGGTCGAC- 187498 Query 39171 AGCCTCGCTCGCGCGCTCCCTTCTGGAAGTTCACGAACTCCTTGGCCAGAACCTCGGGCT 39230 ||| ||||||| || || | | ||| || ||| ||||||||||| ||||||||| Sbjct 187499 -GCCGCGCTCGCCCGAACCTTCCATGAACTTGACGCGCTCCTTGGCCATTTCCTCGGGCT 187557 Query 39231 TCTTCTTGCCCATGGCCCGACGCAGCAGGTCGGCCTGGCCCAGGCTGTAGCCAGCGAGGA 39290 |||||||||||||||| || || |||| |||||| |||||| ||||| || || | Sbjct 187558 TCTTCTTGCCCATGGCGCGGCGGAGCATGTCGGCGCCGCCCAGCGAATAGCCGGCCAGCA 187617 Query 39291 TCTGCGCCGCCTTCTGCACCTGCTCCTGGTAGATGATGAGCCCGTACGTCGGGTCCAGGA 39350 ||| || || | |||||| |||||||||| ||||| ||||| || | Sbjct 187618 CCTGGGCGATCTGCATCACCTGATCCTGGTAGAGGATGACACCGTAGGT---------GT 187668 Query 39351 TCTCCCGCAGGGGCTCCTCCACCTCGGG--GTGAATCGGCGAGATCGCCTGCTGTCCATT 39408 ||||| ||| || ||||| |||||| | | || ||| | ||| | || | || | Sbjct 187669 TCTCCAGCACCGG---CTCCAGCTCGGGATGCGGATAGGCCACGTCGGC-GC-GGCCGTG 187723 Query 39409 CTTCCGGAGGGCATAGT--TCGTGTGTGAGCCAACGCCCATCGGACCCGGACGGTACAGC 39466 ||| ||| | ||| ||| || || || ||| ||||||||| || |||||| Sbjct 187724 CTTGCGGTTGATGAAGTCGTCGACCATG-CCCGAC-TCCAGCGGACCCGGGCGATACAGC 187781 Query 39467 GCGACGACGGCCGAGATGTCCTCGAAGTTGTCGGGCTTCAGCAGGCGGAGCAGGGAGCGC 39526 || || | ||| | |||||||||| ||||| ||| || ||| | Sbjct 187782 GCCACCAGTGCCACCACGTCCTCGAAGCGCGAAGGCTTGAGCTTCTTGATCAGCTCCTTC 187841 Query 39527 ATCGCACCGC-CGTCGAGCTGGAACACCGAGAGCGTGTCACCCTTGGCCAGCAGCTCGTA 39585 || || ||| |||||||||||||| | | || | |||| || || |||| ||| Sbjct 187842 AT-GCCGCGCGATTCGAGCTGGAACACGGCGGTGGTCTTGCCCTCGGACATGAGCTGGTA 187900 Query 39586 GGTCGGGGCGTCGTCCAGCGGGATGTTCTCCAGGTCGA-CG--TGCTC-CCCACGGTTAC 39641 || | | ||| | ||||||||| ||| | ||||| || | || |||| || | Sbjct 187901 GGGACGCGGGTCATTGAGCGGGATGCGCTCGATGTCGATCGGCGGTTCGCCCAGGGCGGC 187960 Query 39642 ------GACG--GATGTTCTCGACGGCGTCGCCCATGATCGTGAGGTTCCGCAGGCCGAG 39693 | || ||||| || | || | | ||||| || || | ||||||||||| Sbjct 187961 GCGCTTGGCGTTGATGTCCTTCAGCGCCCAGTCGATGATGGTCAGCGTGCGCAGGCCGAG 188020 Query 39694 GAAGTCCATCTTGACCGCGCCCATGCTCTCG 39724 |||||| | ||||||| ||||| | |||| Sbjct 188021 GAAGTCGAACTTGACCAGGCCCACGGCCTCG 188051 >seq1 Length=1655743 Score = 147 bits (162), Expect = 7e-31 Identities = 235/333 (71%), Gaps = 6/333 (2%) Strand=Plus/Minus Query 40091 CCGAAGGTCCCGATCTGTGCGACCTTGTCGGCCCCGTACTTCTCGGTGACGTACCGGATG 40150 |||||||| |||||| | ||||||||| || || || || || ||||| Sbjct 660906 CCGAAGGTGATGATCTGCCCCACCTTGTCGCGGCCATAGCGTTCCTGCACATAGCGGATC 660847 Query 40151 ACCTCGCCGCGACG--CCGGTCATCGAAGTCGATGTCAACGTCGGGCATGGACACGCGCT 40208 ||||| |||| || || || |||||||||||| | ||||||||| ||||| || | Sbjct 660846 ACCTCTTCGCGGCGATCCATGCA--GAAGTCGATGTCGAAGTCGGGCATCGACACCCGTT 660789 Query 40209 CGGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGCTCCAGTGGATCGAGGTCGGTGATCC 40268 | ||||||||||| || ||||| | ||| | | ||| || || || |||||||| Sbjct 660788 CCGGGTTCAGGAAGCGTTCGAACAGCAGCGCATAGCGCAGCGGGTCAAGATCGGTGATGG 660729 Query 40269 CGAG-GCAGTAGGCGACCAGCGAACCGGCTGCCGAGCCTCGCCCAGGACCGACCCACACG 40327 || ||| || || ||||| || || || |||| || ||||| ||||||||| | | Sbjct 660728 TCAGCGCA-TAAGCCACCAGAGAGCCTGCACCCGACCCCCGCCCCGGACCGACCGGGATG 660670 Query 40328 CCGTTCTCCTTGGCCCAGCCGATGAAGTCGGCGACGACCAGGAAGTAGGACGGGAAGCCC 40387 | | | |||||||||| |||||| ||||| |||| ||||||||| ||| || | Sbjct 660669 GCATGCGCCTTGGCCCATTTGATGAAATCGGCCACGATGAGGAAGTAGCCCGGAAACTTC 660610 Query 40388 ATCTGGATGATCATGTCGATCTCGTACTGGAGC 40420 ||| | ||| ||||||| |||| | || ||| Sbjct 660609 ATCCGCTCGATAATGTCGAGCTCGAATTGCAGC 660577 Score = 82.4 bits (90), Expect = 2e-11 Identities = 95/127 (75%), Gaps = 1/127 (1%) Strand=Plus/Minus Query 39208 CTCCTTGGCCAGAACCTCGGGCTTCTTCTTGCCCATGGCCCGACGCAGCAGGTCGGCCTG 39267 ||| || |||| |||||| | |||||||||||||| || ||||| |||||||| Sbjct 661798 CTCTTTTGCCATCTCCTCGGCGATTTTCTTGCCCATGGCGCGGCGCAGAAGGTCGGCGCC 661739 Query 39268 GCCCAGGCTGTAGCCAGCGAGGATCTGCGCCGCCTTCTGCACCTGCTCCTGGTAGATGAT 39327 ||| ||||||||||| || | || ||| || || | |||||| ||||| || | ||| Sbjct 661738 GCCGAGGCTGTAGCCCGCCATGACCTGTGCAATCTGCATCACCTGTTCCTGATAAACGAT 661679 Query 39328 GA-GCCC 39333 || |||| Sbjct 661678 GATGCCC 661672 >seq27787 Length=17407 Score = 134 bits (148), Expect = 4e-27 Identities = 227/323 (70%), Gaps = 12/323 (4%) Strand=Plus/Plus Query 39026 GCCATGTACTCGGCCGGGTAGTGCGTCTTCAGGTACGCCGTGCGGTAGGCGATGAGCCCG 39085 |||||| || ||||||||||||| ||| || | || || |||||| || || || Sbjct 1 GCCATGAACGGCGCCGGGTAGTGCGCCTTGAGCCAGGCGGTCTGGTAGGAGACCAGGCCA 60 Query 39086 TACGCCGCAGAGTGCGCCTTGTTGAAGGCGTACCCGGCGAAGGGTACGAGCACGTCCCAC 39145 || || || ||||||| |||||||||| |||| |||||||| | | | || ||| | Sbjct 61 TAGGCTGCGGAGTGCGACTTGTTGAAGCCGTAGCCGGCGAACTTTTCTACCAGGTCAAAG 120 Query 39146 A-----CCGCCTGGATGGCGCTGTCCGAGTAGCCTCGCTCGCGCGCTCCCTTCTG-GAAG 39199 | ||| | | | ||| ||| || | | | | || | ||||| |||| Sbjct 121 ATGTTACCGGCCAGTTC-CGC-GTCGATGTTG--TTGTTGGCACAA--CCTTCGATGAAG 174 Query 39200 TTCACGAACTCCTTGGCCAGAACCTCGGGCTTCTTCTTGCCCATGGCCCGACGCAGCAGG 39259 || || |||||||| ||||||||||||||||||||||||| || ||||||| | Sbjct 175 CCGCCGCGCTGCTTGGCCATCTCCTCGGGCTTCTTCTTGCCCATGGCGCGGCGCAGCATG 234 Query 39260 TCGGCCTGGCCCAGGCTGTAGCCAGCGAGGATCTGCGCCGCCTTCTGCACCTGCTCCTGG 39319 || ||||| |||||| | |||||| | | || ||| || || | |||||| |||||| Sbjct 235 TCCGCCTGACCCAGGGTATAGCCACCCATGACCTGGGCGATCTGCATCACCTGTTCCTGG 294 Query 39320 TAGATGATGAGCCCGTACGTCGG 39342 || | ||||| ||||| ||||| Sbjct 295 TACAGGATGATGCCGTAGGTCGG 317 >seq7 Length=747525 Score = 98.7 bits (108), Expect = 3e-16 Identities = 178/258 (69%), Gaps = 2/258 (1%) Strand=Plus/Plus Query 40174 GAAGTCGATGTCAACGTCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGAT 40233 |||||||| ||| | ||| ||||| ||||| ||||| ||||| | || || ||||| | Sbjct 503463 GAAGTCGACGTCGAAGTCTGGCATCGACACCCGCTCCGGGTTTAAAAAACGTTCGAAAAG 503522 Query 40234 GAGCCCGTGCTCCAGTGGATCGAGGTCGGTGATCCCGAG-GCAGTAGGCGACCAGCGAAC 40292 || | ||| || ||||| || ||||| || || ||| || || |||||||| | Sbjct 503523 CAGGTCAAACTCAAGCGGATCCAGATCGGTAATTTTTAGCGCA-TAAGCTACCAGCGAGC 503581 Query 40293 CGGCTGCCGAGCCTCGCCCAGGACCGACCCACACGCCGTTCTCCTTGGCCCAGCCGATGA 40352 |||| | || || ||||| || || ||| | |||| ||||| ||| || | Sbjct 503582 CGGCGCCGGAACCCCGCCCCGGGCCAACCGGAATATCGTTATCCTTACTCCACTGAATAA 503641 Query 40353 AGTCGGCGACGACCAGGAAGTAGGACGGGAAGCCCATCTGGATGATCATGTCGATCTCGT 40412 | || || |||||||||||| || |||||||||||| | |||| |||| || Sbjct 503642 ACTCCATTACAACCAGGAAGTAGCCGGGAAAGCCCATCTGGTTAATCACATCGAGTTCAA 503701 Query 40413 ACTGGAGCTGCTTGCCGT 40430 ||| ||| ||| | ||| Sbjct 503702 TCTGTAGCCGCTCGTCGT 503719 >seq53823 Length=7075 Score = 95.1 bits (104), Expect = 4e-15 Identities = 108/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 39195 GGAAGTTCACGAACTCCTTGGCCAGAACCTCGGGCTTCTTCTTGCCCATGGCCCGACGCA 39254 ||||| || || | |||||||| | | ||| |||||||||||| || || |||| Sbjct 6971 GGAAGATCTCGCGGTGCTTGGCCATTTCGGCAGGCACCTTCTTGCCCATCGCGCGGCGCA 6912 Query 39255 GCAGGTCGGCCTGGCCCAGGCTGTAGCCAGCGAGGATCTGCGCCGCCTTCTGCACCTGCT 39314 |||||||||| |||||| |||||| ||| |||||||||| || | |||||||| Sbjct 6911 GCAGGTCGGCGCCGCCCAGCGAGTAGCCGCCGACGATCTGCGCCATCTGCATCACCTGCT 6852 Query 39315 CCTGGTAGATGATGAGCCCGTACGT 39339 ||||||| | |||| ||||| || Sbjct 6851 CCTGGTACACCATGATGCCGTAGGT 6827 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160063081781064