Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_028834.1 Length=48216 Score E Sequences producing significant alignments: (Bits) Value seq68 87.8 6e-13 seq5373 86.0 2e-12 >seq68 Length=444459 Score = 87.8 bits (96), Expect = 6e-13 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 36269 TGGTCGGAGTACTAGGATTCGAACCTAGGACCCTCTGCTCCCAAAGCAGATGCGCTGCCA 36328 ||||||||| ||||||||||||| ||||| |||||||| |||||| |||||| ||| Sbjct 223241 TGGTCGGAGCGAGAGGATTCGAACCTCCGACCCCCTGCTCCCGAAGCAGGTGCGCTACCA 223300 Query 36329 GACTGCGCTACACTCCGA 36346 | ||||||||| |||||| Sbjct 223301 GGCTGCGCTACGCTCCGA 223318 >seq5373 Length=95907 Score = 86.0 bits (94), Expect = 2e-12 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 36269 TGGTCGGAGTACTAGGATTCGAACCTAGGACCCTCTGCTCCCAAAGCAGATGCGCTGCCA 36328 ||||||||| | ||||||||||||||| ||||| ||| ||||||| ||| ||| || ||| Sbjct 61887 TGGTCGGAGCAGTAGGATTCGAACCTACGACCCCCTGGTCCCAAACCAGGTGCACTACCA 61946 Query 36329 GACTGCGCTACACTCCGAAA 36348 | ||| |||| |||||||| Sbjct 61947 GGCTGTGCTATGCTCCGAAA 61966 Score = 82.4 bits (90), Expect = 2e-11 Identities = 65/78 (83%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 36269 TGGTCGGAGTACTAGGATTCGAACCTAGGACCCTCTGCTCCCAAAGCAGATGCGCTGCCA 36328 ||||||||| | ||||||||||||||| ||||| ||| ||||||| ||| ||| || ||| Sbjct 24977 TGGTCGGAGCAGTAGGATTCGAACCTACGACCCCCTGGTCCCAAACCAGGTGCACTACCA 25036 Query 36329 GACTGCGCTACACTCCGA 36346 | ||| |||| |||||| Sbjct 25037 GGCTGTGCTATGCTCCGA 25054 Score = 82.4 bits (90), Expect = 2e-11 Identities = 65/78 (83%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 36269 TGGTCGGAGTACTAGGATTCGAACCTAGGACCCTCTGCTCCCAAAGCAGATGCGCTGCCA 36328 ||||||||| | ||||||||||||||| ||||| ||| ||||||| ||| ||| || ||| Sbjct 62228 TGGTCGGAGCAGTAGGATTCGAACCTACGACCCCCTGGTCCCAAACCAGGTGCACTACCA 62287 Query 36329 GACTGCGCTACACTCCGA 36346 | ||| |||| |||||| Sbjct 62288 GGCTGTGCTATGCTCCGA 62305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 153839630419696