Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_028892.1 Length=49949 Score E Sequences producing significant alignments: (Bits) Value seq363 208 2e-49 seq27787 143 8e-30 seq1 138 4e-28 seq7 91.5 5e-14 seq53823 82.4 2e-11 >seq363 Length=289854 Score = 208 bits (230), Expect = 2e-49 Identities = 542/812 (67%), Gaps = 46/812 (6%) Strand=Plus/Plus Query 37843 GGCGGCAGGACCCGAAGGCCCATGCGCCTGCACTCGCCGAGGTACGTGGCCATCTTGTTC 37902 |||||| ||| | ||||||||| | ||||| ||| | || | ||||||| Sbjct 187263 GGCGGCCGGATCTTCAGGCCCATGGCGCGACACTCCTCGATGAGGGTCACGATCTTGTCG 187322 Query 37903 TTGTCGTCGCCCACCGAGGTGAGCACGGCCGCCATGTACTCGGCCGGGTAGTGCGTCTTC 37962 ||| | | |||| | ||||| ||||||||| ||||||||||||| ||| ||| Sbjct 187323 GTGTTGGCCATTTCCGACGACAGCACCGCCGCCATGAACTCGGCCGGGTAATGCACCTTG 187382 Query 37963 AGGTACGCCGTGCGGTAGGCGATGAGTCCGTACGCCGCAGAGTGCGCCTTGTTGAAGGCG 38022 || | || || |||| | | || |||| || || ||||||| |||||||||| || Sbjct 187383 AGCCAGGCGGTCTGGTACGACACCAGCGCGTAGGCGGCCGAGTGCGACTTGTTGAAGCCG 187442 Query 38023 TACCCGGCGAAGGGTACGAGCACGTCCCACA--CCGCCCGGATGGCAGCCTCCGAGTAG- 38079 || |||||||| | | | ||| | | ||||| | ||| |||| || | Sbjct 187443 TAGCCGGCGAACTTCTCCATGAGGTCGAAGATGCCGCCGGCCTGG-----TCCGGGTCGA 187497 Query 38080 --CCTCGCTCGCTCGCCCCCTTCTGGAAGTTCACGAACTCCTTGGCCAGCACCTCGGGCT 38137 || ||||||| || || | | ||| || ||| ||||||||||| ||||||||| Sbjct 187498 CGCCGCGCTCGCCCGAACCTTCCATGAACTTGACGCGCTCCTTGGCCATTTCCTCGGGCT 187557 Query 38138 TCTTCTTGCCCATGGCGCGACGGAGGAGGTCGGCCTGACCGAGGGTGTACCCGGCCAGGA 38197 ||||||||||||||||||| ||||| | |||||| || || | || |||||||| | Sbjct 187558 TCTTCTTGCCCATGGCGCGGCGGAGCATGTCGGCGCCGCCCAGCGAATAGCCGGCCAGCA 187617 Query 38198 TCTGCGCCGCCTTCTGCACCTGCTCCTGGTAGATGATGAGCCCGAAGGTCGGGTCCAGGA 38257 ||| || || | |||||| |||||||||| ||||| ||| |||| | Sbjct 187618 CCTGGGCGATCTGCATCACCTGATCCTGGTAGAGGATGACACCGTAGGT---------GT 187668 Query 38258 TCTCGGCCAGCGGCTCCTCCACCTCGGG--GTGGATCGGCGTGATCTCCTGCTGACCGTT 38315 ||| ||||| | ||||| |||||| | |||| ||| || | || | |||| Sbjct 187669 TCT---CCAGCACCGGCTCCAGCTCGGGATGCGGATAGGCCACGTCGGC-GC-GGCCGTG 187723 Query 38316 CTTGCGGAGGGCGTAGTTCGT-GTGCGAGCCCATGCCCATCGGACCCGGACGGTACAGCG 38374 ||||||| | | || |||| | | |||| ||| ||||||||| || ||||||| Sbjct 187724 CTTGCGGTTGATGAAG-TCGTCGACCATGCCCGACTCCAGCGGACCCGGGCGATACAGCG 187782 Query 38375 CGACGACGGCCGAGATGTCCTCGAACTGGTCCGGCTTCAGCAGGCGAAGCAGGGAGCGCA 38434 | || | ||| | ||||||||| | ||||| ||| | ||| | Sbjct 187783 CCACCAGTGCCACCACGTCCTCGAAGCGCGAAGGCTTGAGCTTCTTGATCAG---CTCCT 187839 Query 38435 TCGCGCCGC-CG--TCGAGCTGGAAGACCGAGAGGGTGTCGCCCCTGGCCAGCAGCTCGT 38491 || ||||| || ||||||||||| || | | ||| | |||| || || |||| || Sbjct 187840 TCATGCCGCGCGATTCGAGCTGGAACACGGCGGTGGTCTTGCCCTCGGACATGAGCTGGT 187899 Query 38492 AGGTTGCCGGGTCGTCCAGCGGGATGTTCTCGATGTCGA-CG--TGCTC-ACCACGGTTG 38547 ||| |||||| | ||||||||| ||||||||||| || | || ||| || | Sbjct 187900 AGGGACGCGGGTCATTGAGCGGGATGCGCTCGATGTCGATCGGCGGTTCGCCCAGGGCGG 187959 Query 38548 C------GGCG--GATGTTCTCGACCGCGTCGCCCATGATCGTGAGGTTCCGGAGCCCGA 38599 | |||| ||||| || | ||| | | ||||| || || | || || |||| Sbjct 187960 CGCGCTTGGCGTTGATGTCCTTCAGCGCCCAGTCGATGATGGTCAGCGTGCGCAGGCCGA 188019 Query 38600 GGAAGTCCATCTTCAGCAGGCCCAGGGCCTCG 38631 ||||||| | ||| | |||||||| ||||||| Sbjct 188020 GGAAGTCGAACTTGACCAGGCCCACGGCCTCG 188051 Score = 188 bits (208), Expect = 2e-43 Identities = 199/262 (76%), Gaps = 0/262 (0%) Strand=Plus/Plus Query 39081 GAAGTCGATGTCCACGTCGGGCATGGAGACACGCTCAGGGTTCAGGAACCGCTCGAAGAT 39140 |||||||||||| | |||||||||||| || ||||| || || ||||| |||||||| | Sbjct 188483 GAAGTCGATGTCGAAGTCGGGCATGGACACGCGCTCGGGATTGAGGAAGCGCTCGAACAG 188542 Query 39141 GAGCCCGTGAGGGATGGGGTCCAGGTCGGTGATCCCGAGGGCGTACGCGGCCAGCGAGCC 39200 || ||| ||| || |||||||||||||| || | ||| || |||||||||| Sbjct 188543 CAGGTCGTACTTGATCGGATCCAGGTCGGTGATGAACAGCGAGTAAGCCACCAGCGAGCC 188602 Query 39201 AGCCGCAGAGCCGCGCCCAGGGCCGACCCACACGCCGTTCTCCTTCGCCCAGCCGATGAA 39260 || | || ||||| || || || ||| ||||||||| | ||| ||||||| |||||| Sbjct 188603 GGCGCCGGAACCGCGACCCGGCCCCACCGGCACGCCGTTGTTCTTGGCCCAGCGGATGAA 188662 Query 39261 GTCGGCGACGACGAGGAAGTACGACGGGAACCCCATCTGGTTGATCATGTCGATCTCGTA 39320 ||| ||||| |||||||| ||| || |||||||||||||| |||| || |||| | Sbjct 188663 GTCCATGACGATCAGGAAGTAGCCCGGAAAACCCATCTGGTTGATGATGTTGAGCTCGAA 188722 Query 39321 CTCGACCTGCGTGCGGTGCTCG 39342 ||| | ||| ||||| |||| Sbjct 188723 CTCCAGGCGCGCGCGGTACTCG 188744 >seq27787 Length=17407 Score = 143 bits (158), Expect = 8e-30 Identities = 412/621 (66%), Gaps = 41/621 (7%) Strand=Plus/Plus Query 37933 GCCATGTACTCGGCCGGGTAGTGCGTCTTCAGGTACGCCGTGCGGTAGGCGATGAGTCCG 37992 |||||| || ||||||||||||| ||| || | || || |||||| || || || Sbjct 1 GCCATGAACGGCGCCGGGTAGTGCGCCTTGAGCCAGGCGGTCTGGTAGGAGACCAGGCCA 60 Query 37993 TACGCCGCAGAGTGCGCCTTGTTGAAGGCGTACCCGGCGAAGGGTACGAGCACGTCCCAC 38052 || || || ||||||| |||||||||| |||| |||||||| | | | || ||| | Sbjct 61 TAGGCTGCGGAGTGCGACTTGTTGAAGCCGTAGCCGGCGAACTTTTCTACCAGGTCAAAG 120 Query 38053 A-----CCGCCCGGATGGCAGCCTCCGAGTAGCCTCGCTCGCTCGCCCCCTTCTG-GAAG 38106 | ||| || | | | || || || | | | | || | || ||| |||| Sbjct 121 ATGTTACCGGCCAGTT--CCGCGTCGATGTTG--TTGTTGGCACAACC--TTCGATGAAG 174 Query 38107 TTCACGAACTCCTTGGCCAGCACCTCGGGCTTCTTCTTGCCCATGGCGCGACGGAGGAGG 38166 || || |||||||| | |||||||||||||||||||||||||||| || || | | Sbjct 175 CCGCCGCGCTGCTTGGCCATCTCCTCGGGCTTCTTCTTGCCCATGGCGCGGCGCAGCATG 234 Query 38167 TCGGCCTGACCGAGGGTGTACCCGGCCAGGATCTGCGCCGCCTTCTGCACCTGCTCCTGG 38226 || |||||||| ||||| || || ||| || ||| || || | |||||| |||||| Sbjct 235 TCCGCCTGACCCAGGGTATAGCCACCCATGACCTGGGCGATCTGCATCACCTGTTCCTGG 294 Query 38227 TAGATGATGAGCCCGAAGGTCGG-----GTCCAGGATCTCGGCCAGCGGCTCCTCCACCT 38281 || | ||||| ||| ||||||| | | || || |||| ||| | || | Sbjct 295 TACAGGATGATGCCGTAGGTCGGCTTGAGCACCGGCTCCAGGCCTGCG--TACTGGTAGT 352 Query 38282 CGGGGT--GGATCGGCGTGATCTCCTGCTGACCGTTCTTGCGGAGGGCGTAGTTCGTGTG 38339 |||||| || | | | | ||| | |||| ||||||| | | || |||| Sbjct 353 CGGGGTGCGGGTAG--GACAGCTCGGCACGGCCGTGCTTGCGGTTGATGAAG-TCGT--- 406 Query 38340 CGAGCCCATGCC------CATCGGACCCGGACGGTACAGCGCGACGACGGCCGAGATGTC 38393 | | ||||||| || ||| ||||| ||| ||||||| || | || ||||| Sbjct 407 CCA--CCATGCCGGACTGCAGCGGCCCCGGGCGGAACAGCGCCACCAGTGCGATCATGTC 464 Query 38394 CTCGAACTGGTCCGGCTTCAGCAGGCGAAGCAGGGAGCGCATCGCGCCGC-CG--TCGAG 38450 || | ||| ||||| ||| | ||| | || ||||| || ||||| Sbjct 465 TTCCAGGCAGTCGGGCTTGAGCTTCTTGATCAG---CTCCTTCATGCCGCGCGATTCGAG 521 Query 38451 CTGGAAGACCGAGAGGGTGTCGCCCCTGGCCAGCAGCTCGTAGGTTGCCGGGTCGTCCAG 38510 ||||||||||| | ||| || || | ||||| ||||||||| | ||||||||| Sbjct 522 CTGGAAGACCGCGGTGGTCTCCGCCTTCTGCAGCATGTCGTAGGTTTTCTTGTCGTCCAG 581 Query 38511 CGGGATGTTCTCGATGTCGAC 38531 ||||||| ||||||| ||| Sbjct 582 CGGGATGAAGTCGATGTTGAC 602 >seq1 Length=1655743 Score = 138 bits (152), Expect = 4e-28 Identities = 219/312 (70%), Gaps = 4/312 (1%) Strand=Plus/Minus Query 39009 GATCTGTGCGACCTTGTCACTGCCGTACTTCTCGGTGACGTACCGGATCACGTCGCCACG 39068 |||||| | |||||||| | ||| || || || || |||||||| || | || Sbjct 660895 GATCTGCCCCACCTTGTCGCGGCCATAGCGTTCCTGCACATAGCGGATCACCTCTTCGCG 660836 Query 39069 GCGACGGTCATC--GAAGTCGATGTCCACGTCGGGCATGGAGACACGCTCAGGGTTCAGG 39126 |||| ||| |||||||||||| | ||||||||| || || || || ||||||||| Sbjct 660835 GCGATC--CATGCAGAAGTCGATGTCGAAGTCGGGCATCGACACCCGTTCCGGGTTCAGG 660778 Query 39127 AACCGCTCGAAGATGAGCCCGTGAGGGATGGGGTCCAGGTCGGTGATCCCGAGGGCGTAC 39186 || || ||||| | ||| | | | | ||||| || |||||||| || || || Sbjct 660777 AAGCGTTCGAACAGCAGCGCATAGCGCAGCGGGTCAAGATCGGTGATGGTCAGCGCATAA 660718 Query 39187 GCGGCCAGCGAGCCAGCCGCAGAGCCGCGCCCAGGGCCGACCCACACGCCGTTCTCCTTC 39246 || |||| ||||| || | || || ||||| || |||||| | | | | | |||| Sbjct 660717 GCCACCAGAGAGCCTGCACCCGACCCCCGCCCCGGACCGACCGGGATGGCATGCGCCTTG 660658 Query 39247 GCCCAGCCGATGAAGTCGGCGACGACGAGGAAGTACGACGGGAACCCCATCTGGTTGATC 39306 ||||| |||||| ||||| |||| ||||||||| ||| ||| |||| | | ||| Sbjct 660657 GCCCATTTGATGAAATCGGCCACGATGAGGAAGTAGCCCGGAAACTTCATCCGCTCGATA 660598 Query 39307 ATGTCGATCTCG 39318 ||||||| |||| Sbjct 660597 ATGTCGAGCTCG 660586 Score = 82.4 bits (90), Expect = 2e-11 Identities = 95/127 (75%), Gaps = 1/127 (1%) Strand=Plus/Minus Query 38115 CTCCTTGGCCAGCACCTCGGGCTTCTTCTTGCCCATGGCGCGACGGAGGAGGTCGGCCTG 38174 ||| || |||| | |||||| | ||||||||||||||||| || || |||||||| Sbjct 661798 CTCTTTTGCCATCTCCTCGGCGATTTTCTTGCCCATGGCGCGGCGCAGAAGGTCGGCGCC 661739 Query 38175 ACCGAGGGTGTACCCGGCCAGGATCTGCGCCGCCTTCTGCACCTGCTCCTGGTAGATGAT 38234 |||||| |||| || |||| || ||| || || | |||||| ||||| || | ||| Sbjct 661738 GCCGAGGCTGTAGCCCGCCATGACCTGTGCAATCTGCATCACCTGTTCCTGATAAACGAT 661679 Query 38235 GA-GCCC 38240 || |||| Sbjct 661678 GATGCCC 661672 >seq7 Length=747525 Score = 91.5 bits (100), Expect = 5e-14 Identities = 224/337 (66%), Gaps = 6/337 (2%) Strand=Plus/Plus Query 37926 CACGGCCGCCATGTACTCGGCCGGGTAGTGCGTCTTCAGGTACGCCGTGCGGTAGGCGAT 37985 ||| |||||||| |||||||||| || |||| ||||| || ||| |||||| || Sbjct 502323 CACCGCCGCCATAAACTCGGCCGGATAATGCGCCTTCATCCACAGCGTTTGGTAGGAGAC 502382 Query 37986 GAGTCCGTACGCCGCAGAGTGCGCCTTGTTGAAGGCGTACCCGGCGAAGGGTACGAGCAC 38045 || |||| || || ||||| | |||||| ||| | || |||||||| | | | || Sbjct 502383 CAGCGCGTAAGCGGCCGAGTGTGACTTGTTAAAGCCATAACCGGCGAATTTTTCTACCAA 502442 Query 38046 GTCCCACACCGCCCGGATGGCAGCCTCCGAGT-AGCCTCGCTCGCT--CGCCCCCTTCTG 38102 || | | | || || || | || | || | | |||||| | | Sbjct 502443 ATCGAAGATTTTC---ATCGCCAGTTCGGGGTCAATACCGTTTTGTACCGCCCCGTCGCG 502499 Query 38103 GAAGTTCACGAACTCCTTGGCCAGCACCTCGGGCTTCTTCTTGCCCATGGCGCGACGGAG 38162 |||| | || || |||||||| |||| ||||| ||||| ||||||||||| || | Sbjct 502500 GAAGGTATCGCGCTGCTTGGCCATTTCCTCCGGCTTTTTCTTACCCATGGCGCGGCGTAA 502559 Query 38163 GAGGTCGGCCTGACCGAGGGTGTACCCGGCCAGGATCTGCGCCGCCTTCTGCACCTGCTC 38222 | |||||| || || | || |||| || || ||| || || | ||||| || Sbjct 502560 TAAGTCGGCACCGCCAAGCGAATAGCCGGACAAGACCTGGGCGATCTGCATTACCTGTTC 502619 Query 38223 CTGGTAGATGATGAGCCCGAAGGTCGGGTCCAGGATC 38259 ||| || | ||| | ||| ||||||| ||||||||| Sbjct 502620 CTGATACAGGATAATACCGTAGGTCGGCTCCAGGATC 502656 >seq53823 Length=7075 Score = 82.4 bits (90), Expect = 2e-11 Identities = 105/145 (72%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 38102 GGAAGTTCACGAACTCCTTGGCCAGCACCTCGGGCTTCTTCTTGCCCATGGCGCGACGGA 38161 ||||| || || | |||||||| | | ||| |||||||||||| ||||| || | Sbjct 6971 GGAAGATCTCGCGGTGCTTGGCCATTTCGGCAGGCACCTTCTTGCCCATCGCGCGGCGCA 6912 Query 38162 GGAGGTCGGCCTGACCGAGGGTGTACCCGGCCAGGATCTGCGCCGCCTTCTGCACCTGCT 38221 | |||||||| || || | ||| ||| | | |||||||||| || | |||||||| Sbjct 6911 GCAGGTCGGCGCCGCCCAGCGAGTAGCCGCCGACGATCTGCGCCATCTGCATCACCTGCT 6852 Query 38222 CCTGGTAGATGATGAGCCCGAAGGT 38246 ||||||| | |||| ||| |||| Sbjct 6851 CCTGGTACACCATGATGCCGTAGGT 6827 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 159373361158152