Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_028898.1 Length=35764 Score E Sequences producing significant alignments: (Bits) Value seq57114 565 6e-157 seq5373 159 8e-35 >seq57114 Length=6393 Score = 565 bits (626), Expect = 6e-157 Identities = 872/1226 (71%), Gaps = 25/1226 (2%) Strand=Plus/Minus Query 24393 TAAGT-GTAGAAGATCAAACCTAATCTGACAGTCCCCCGTTTTAAATTACCGTGTCTGTC 24451 ||||| ||| || ||| || | |||||||||| |||||||| | | | ||| ||||| Sbjct 6167 TAAGTTGTACTAGCTCAGACTTGATCTGACAGTTACCCGTTTTTCAAT-CGGTGACTGTC 6109 Query 24452 AGATTA-ATTTGAGCTTAAATTCTTTTCCACCCAAATCCGTTTTCCATCAAGTAAGGTTG 24510 || ||| ||||||||| ||||||||||| |||||||| ||| ||||| | ||| ||| Sbjct 6108 AGTTTAGATTTGAGCT-AAATTCTTTTCAGCCCAAATCGATTTCCCATCCAATAATGTTT 6050 Query 24511 CCATCGGTGTTCTGCCACAGCACATTTTTCCTTGATGTGTTCGATGGTGATTATAATACA 24570 ||| || ||||||||||||||||||||||||||||| ||||| | | ||| ||||| | Sbjct 6049 CCAGTGGCGTTCTGCCACAGCACATTTTTCCTTGATGGGTTCGGTCATTATTGTAATAAA 5990 Query 24571 TTAACCACTCATCTAAATCCGCTTGTAATGTCGTTAAATCCGTATAAATTTTCTTCCTAA 24630 | ||| || |||| |||| ||||||| | || | ||| | |||||| | | Sbjct 5989 CCATCCATTCGTCTAGATCCTTTTGTAATTCCTCTAGCGACCCATACAGTTTCTTGCGGA 5930 Query 24631 ATGCCACTTGGTAAAATTCTTGTAAGATTGTTTTATGGAACCGTTCGCAGATGCCGTTAG 24690 ||| | || || || || | || || ||||||||||| || || ||||||||||| | Sbjct 5929 ATGTAGCCTGATAGAACTCATTCAAAATCGTTTTATGGAATCGCTCACAGATGCCGTTTG 5870 Query 24691 TCTGCGGATGTTTTA-CCTTGGTTTTACTGTGTTCAATATCATTTATTGCTAAATAAAGC 24749 | || || || || |||| ||||| |||| || ||||| ||||| |||| ||| | | Sbjct 5869 TTTGAGG-TGACATAGCCTTTGTTTTTGTGTGATCGATATCGTTTATCGCTAGATATAAC 5811 Query 24750 TCATAATCGTGATTTTCTACCTTGCCACAATATTCACTTCCTCGGTCAGTTAATATGCGT 24809 | ||| || |||| || || || || ||||| ||| | |||| || || | ||| ||| Sbjct 5810 TGATAGTCATGATGCTCGACTTTACCGCAATACTCAGTGCCTCTATCCGTGAGTATACGT 5751 Query 24810 AACATCGGTAAACCTTGGCTTTCAAAGTATGGTAACACTTTATCATTCAGCATATCCGCA 24869 | ||| || | | || ||| ||||| || | || || || || || || || || Sbjct 5750 AGCATAGGAAGCTCATGTTGTTCGAAGTAAGGCAGAACCTTGTCGTTAAGTATGTCAGCC 5691 Query 24870 GCACTGATAGCGGTCTTCATTGTATAAAGTTTTGCAAACGCCACTTTACTGTAAGTATCA 24929 || | || | || || | || || || || |||||||| || || ||||| ||||| Sbjct 5690 GCGGTAATCGGCGTTTTGGTCGTGTAGAGCTTCGCAAACGCTACCTTGCTGTAGGTATCG 5631 Query 24930 ATAAACGTTTGTTGATAAATACGACCCACTCCTTTGAGGTTGCCCACATAGAAAGTATCT 24989 || || || ||||| ||||| || || || || |||||||| || |||||||| |||||| Sbjct 5630 ATGAAGGTCTGTTGGTAAATGCGGCCTACACCCTTGAGGTTACCGACATAGAATGTATCT 5571 Query 24990 TGTGAGCCAAGATAGCCAGGGTGTGCCGTTTCAATTTCACCACAGGCAATCTCATCTTCT 25049 || || |||||||| || || || ||||||||||||||||||||| |||||| || Sbjct 5570 TGCGAACCAAGATAACCTGGATGCATCGTTTCAATTTCACCACAGGC---CTCATCATCA 5514 Query 25050 TTCTTACGC---TCTAAGGCTTGTACCTGTGTTTCACTGAGTATAATACCTTGTTCTGCA 25106 ||||| | || || || ||||||| || |||| ||||| |||| || || Sbjct 5513 TTCTTTTTCTTTTCAAATGCCGCAACCTGTGCATCCGTGAGGATAATGCCTTCTTGGGCG 5454 Query 25107 ACCAGTTTTTCCAGGGCGATTAATCTTTGCTTAAAATTGGCAAGATGATGACGTAACCAA 25166 || | ||||| || | | | | || || || | | || || || | ||| Sbjct 5453 ACTTTTGCTTCCAACGCTTTCAGGCGCTTTTTGAAGTTTTCCAAATCGTGGCGCAGCCAG 5394 Query 25167 ATCGAACGTACACCTCCTGCTGAAACAAAGATGCCTTGTTTACGGAGTTCGTTACTCACT 25226 || ||||| ||||| | |||||||| || | |||||||||||| | |||||||| | Sbjct 5393 ATTGAACGCACACCACTGGCTGAAACGAACACGCCTTGTTTACGCAACTCGTTACTGGTT 5334 Query 25227 CTTACCTGTCCAAATGCCGGGTTATCAAGAGCAAACTTCACAACAGCTTGCTCTATTGCC 25286 || ||||| || || |||| |||| || ||| | || |||| || || | Sbjct 5333 CTAACCTGACCGTGAGCGGGGTATTCAACCGCGTACTCCGTGACTGCTTTTTCAGTTTCT 5274 Query 25287 TCATCAACACGATTTTTTAAGTTGGGAACGCGTCTATTTTGATTCAGCAAT----GCTTC 25342 ||||| || |||||||||||||||| |||| |||| ||| | | |||| || || Sbjct 5273 TCATCGACGCGATTTTTTAAGTTGG--ACGC-TCTA-CGTGACTTATCAATCAGCGCATC 5218 Query 25343 AACACCACCTTGCTCAACCGCTTGTTGATAACGATAGAATGTATCTCGGCTCATTCCCAT 25402 || || || | || ||| | ||| || ||||| || |||||||| | ||||| Sbjct 5217 AATGCCGCCATCTTCGACCAGCTCTTGGTAGCGATAAAACGTATCTCGCGAAACGCCCAT 5158 Query 25403 TACTTTGCAGGCTTGAGAAATATTACCCAGTTCTTCTGCTAAATTTAATAAACCGGTCTT 25462 |||||||||||| | || | ||||| |||||||| || | ||| | |||||| | || Sbjct 5157 TACTTTGCAGGCCTTTGAGACGTTACCAAGTTCTTCGGCCAGATTGAGTAAACCAGCTTT 5098 Query 25463 GTGTTTAATGAGAGGGTTGTTAGAATAAAACATGAGAGTTTCCTTTTTGTTTAGATTGAT 25522 |||||| |||| |||||||||| || || |||||||||| ||| ||||||| ||||| Sbjct 5097 GTGTTTGATGATTGGGTTGTTAGTATGAAGCATGAGAGTTACCTCTTTGTTTGTTTTGAT 5038 Query 25523 TTTTGA--CA-CTCATAT-TCTAAACGGGAAACTCTCACTTTTTAGAGTGAAT-TGTCAG 25577 | || || | | | | || ||||||| |||||||||||||| || ||| |||||| Sbjct 5037 TAAAGATTCAGCACCTTTATCAAAACGGGTAACTCTCACTTTTTCAAGCTAATGTGTCAG 4978 Query 25578 ATCAAGTCTGATCTTCTACACCTTAT 25603 ||| || ||| || |||| || || Sbjct 4977 ATCTTGTTTGAACTAATACATCTAAT 4952 >seq5373 Length=95907 Score = 159 bits (176), Expect = 8e-35 Identities = 581/900 (65%), Gaps = 22/900 (2%) Strand=Plus/Minus Query 1875 TAATTTCTGCCGCTTGTTCGGCAAAATCAGCCCCTTTAAAAGTGCGATATTCCAACAAAC 1934 |||| | | | |||||||| | ||| ||| | |||||||| || ||| | | | Sbjct 58809 TAATATGTTCTGCTTGTTCCGAAAAGTCATCACCTTTAAATTGATGACGTTCAAGAACGC 58750 Query 1935 GGAACTTGCCCCCATCGACTTTCGGTGGAGCAATCACCACCAATGCCGAGCG--GTCGCC 1992 | || || || ||| | || || ||||||| || || ||| ||| ||| ||| || Sbjct 58749 GAAATTTACCACCAGCTACAGCTGGAGGAGCAA-CAACAACAA-GCCCAGCATTGTCACC 58692 Query 1993 GGTGTAAGAAGGATCATAGCCTACCCACACTTCTTTATTGCCAAACGGTCGCATATAGCC 2052 || ||| ||||| || || | ||| || ||||||| | || || || ||| | Sbjct 58691 AGTCAAAGCTGGATCGTAACCGATCCAAACAGGTTTATTGGCGAATGGGCGGTTATGCCA 58632 Query 2053 ATCGGTGAAAACGTAGTCTTTCCAAATTTCCATTGAATCGACCAAGCAACGCTGAATCAT 2112 | | ||||| || ||||| ||||| | || ||| |||| ||| ||| | ||| Sbjct 58631 AACTTTGAAA------TCATTCCATATTTCGAGTGTATCAACCATGCAGATCTGCAACAT 58578 Query 2113 TGTAAATTTAAAGACGGATTGGTTATCATCAATAAACTCACACATAAAGAGCTGCTCGAA 2172 | | || | ||| ||| |||||| | ||| ||||||||||| || | | || Sbjct 58577 GCTGAGAGGGAACATGGACTGGCCATCATCCACAAATTCACACATAAATAGGTTGGCAAA 58518 Query 2173 CTCATCAGGCGAGTTTTCCAGTTTGAGTTGCTCAATATCAAACAGGTTACAGCCACCTGC 2232 || ||||| || | ||| | ||| ||| ||||||||| || | || ||| |||||| | Sbjct 58517 GTCCTCAGGTGAATATTCAAATTTCAGTCGCTCAATATTGAATAAGTCACAACCACCTTC 58458 Query 2233 CTCGGCATCGTAGATATTCACGATTTGTCGCCATTGGCCGTCTCCGCATTTTTTGCCGTT 2292 || |||||| | | | | |||||||| ||||| ||| ||||| || | Sbjct 58457 CTTGGCATCTTCTACAGTGACGATTTGACGCCACATCATGTCCTCGCATACACGACCATG 58398 Query 2293 TTTCAA---ATTAGCGTGCGAAATATCAATTTCCACTTGCTCCGCTTTCGGTCGTTTGC- 2348 ||| || ||| || || | ||| |||| | ||| | | || ||| ||| | Sbjct 58397 TTTTAATGCTTTA---TGTGATAGATCGATTTTGAATTGTTGATCCTTTGGT--TTTCCT 58343 Query 2349 -GGTTAAACAGCTTGCCCGACCAAAGCAGATAGGCGGAATGGGTAATGCTCGAAGGGGTA 2407 ||| || | | || | ||| | ||| || || || || || || || Sbjct 58342 TTGTTGAATCGGGTACCAGTCCAGAATTTATAAGCTTCGTGTGTGATCGATGAGGGCGTT 58283 Query 2408 GAAAAATAAGTAATCCGATATTGTTTTTGGCTTGCCATACCCGCAGCAACTTTGCGGATT 2467 ||||| ||||| | || ||| | || | |||||||||| |||||||| | | Sbjct 58282 GAAAAGTAAGTTTTACGCCATTTATCGTGCGTGGCCATACCCGACGCAACTTTCTCAAGT 58223 Query 2468 TCTTCAAAGCGGTTTACCCAAAAGATTTCATCAAAATAGAGATTGCCGTGGTAAGACTGT 2527 || ||||| | | | ||||||||||||||||||||| | ||| || || ||| Sbjct 58222 TCATCAAAACCATATGTCCAAAAGATTTCATCAAAATATAAATTTCCATGTGGGCCCTGA 58163 Query 2528 GCCGTTTTCGAGTTTGTACCCAAGAAAATTAGTTGAGACTCGTTCGGCAAGGTAATGGTT 2587 |||||| | |||| || || ||||| | || | | | || | || | || | Sbjct 58162 GCCGTTCTATAGTTAGTTCCTAAGAATCTAAGCTCTGCACCATTAGATAAAATGATCGGA 58103 Query 2588 TCGCCTTTTAGCTCCACATCGGCAACCCGTTTGGCGTATGCCACAATAT-AGGCTCTAAA 2646 || || || || ||| || ||| | || | || ||| | | ||| ||| Sbjct 58102 TCACCAGAGAGTTCAACACCGCAAACATCTGCTGCAAAAGCTTTAATGTAATGCTTGAAA 58043 Query 2647 TTGCAATGCCTGTTTTTTCGAGGCGGAAATAAAAATCTGATTTCTACCGGTTACTAACGC 2706 | ||||||| ||| ||||| || | |||||||||||||| || ||| || || Sbjct 58042 AT-ATGTGCCTGTGCTTTTGAGGCAGATAGAAAAATCTGATTTCGGCCTGTTCTTACTGC 57984 Query 2707 ATCAACTAACGCCTCGTGAGCAAAATAATAAGTCGCTCCAATTTGACGACTTTTAAGAAT 2766 ||| |||| || || |||||||||||| | ||||| |||||||| |||||||| | ||| Sbjct 57983 ATCGACTAGGGCTTCATGAGCAAAATAAAAGGTCGCACCAATTTGGCGACTTTTTAAAAT 57924 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 114078513769232