Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_028943.1 Length=29237 Score E Sequences producing significant alignments: (Bits) Value seq5373 102 2e-17 >seq5373 Length=95907 Score = 102 bits (112), Expect = 2e-17 Identities = 141/195 (72%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 23310 CGTGACGGTTTCCGCTTCTGGGGTAACCGTACCTGCTCTGATGACCCGCTGTTCCTCTTT 23369 ||||| || ||||| || |||||| ||||| || |||| ||| || | || ||| Sbjct 44906 CGTGATGGCTTCCGTTTTTGGGGTTCACGTACTTGTTCTGCTGATCCTTTATTTGCATTT 44847 Query 23370 GAAAACTACACCCGCACCGCGCAGGTGCTGGCCGACACGATGGCTGAGGCGCACATGTGG 23429 ||||||| || || || || || || || | |||||||||||||| | || |||||| Sbjct 44846 GAAAACTCAACTCGTACAGCTCAAGTTTTGTCGGACACGATGGCTGAAGGTCATATGTGG 44787 Query 23430 GCGGTGGACAAGCCCAT-CACCGCAACGCTGATTCGCGACATCGTTGACGGCATCAATGC 23488 || || || || || | |||| || | || |||||||| || ||||| ||||| Sbjct 44786 GCAGTTGATAAACCTTTGCACC-CATCTTTGGCGAAAGACATCGTAGAGGGCATTAATGC 44728 Query 23489 CAAATTCCGTGAGCT 23503 |||||||||||| || Sbjct 44727 CAAATTCCGTGATCT 44713 Score = 84.2 bits (92), Expect = 4e-12 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 23970 CGTTTTGCTGGCTCTTACCAGCGCGACGATACAGGCGAAACGGTGGCCGTCGAGGTGGTC 24029 || ||||||||||| ||||| || ||||||||||| ||||| || ||||| || ||| Sbjct 44248 CGCTTTGCTGGCTCATACCAACGTGACGATACAGGTGAAACATCTGCAGTCGAAGTCGTC 44189 Query 24030 ATGCGTGGCCGTCAGAAAGAAATCGA 24055 || ||||||||||| ||||||| || Sbjct 44188 ATCCGTGGCCGTCATGAAGAAATTGA 44163 Score = 80.6 bits (88), Expect = 5e-11 Identities = 137/192 (71%), Gaps = 10/192 (5%) Strand=Plus/Minus Query 11839 TCGATGCACTGGTGATGGATGCAACCAACAACCTGATTGAACCGTGGTAT--CAGGAAGA 11896 |||||||| |||| |||||| |||||| | ||||||| | |||| ||||| | Sbjct 55778 TCGATGCATTGGTAATGGATTTAACCAATGAAATGATTGAT--GAGGTACACCAGGACAA 55721 Query 11897 CCCTGACCTTGTGGTGATTGTGGGA-CGTCAGCTACTGG--CGGACAAGTATTTCCCCAT 11953 ||||| | || || | | || | |||| ||||| | ||||| |||||||| | Sbjct 55720 TCCTGATTTGGTTGT-ACTATGTAATCGTCG--TACTGTTTCTGACAAATATTTCCCACT 55664 Query 11954 CGTTAACAAGGAGCAGGACAACAGCGAGATGCTGGCCGCTGACGTCATTATCAGCCAGAA 12013 || ||||| ||||| || |||||||| | || | || || | ||||||||||| || Sbjct 55663 GGTAAACAAAGAGCAAGAGAACAGCGAAAAACTTTCTGCAGATATTATTATCAGCCAAAA 55604 Query 12014 ACGCATCGGCAA 12025 |||||| ||||| Sbjct 55603 ACGCATGGGCAA 55592 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 93236816983368