Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_028945.1 Length=206713 Score E Sequences producing significant alignments: (Bits) Value seq103 107 3e-18 seq6372 93.3 6e-14 >seq103 Length=407632 Score = 107 bits (118), Expect = 3e-18 Identities = 208/306 (68%), Gaps = 6/306 (2%) Strand=Plus/Plus Query 145367 CAGGTTGGCGCGGATTTCCCGGTGTTCCTTGACGCACAAAACCGCGAACA---CGCACTC 145423 ||||| ||| ||| || ||||||||||| | | | | | |||| | ||| || Sbjct 283788 CAGGTCGGCAAGGACTTTCCGGTGTTCCTGCATCCCGACACCGGCGAGGAGTACGCGCTG 283847 Query 145424 GCCCGGATCGAACGCAAGACCGGCGAAGGCTACAAGGGATTCGAATGCGCCTTTGACACG 145483 || || | ||| ||||||| |||| |||||| | |||||| |||| ||| || Sbjct 283848 GCGCGCACCGAGCGCAAGAGCGGCAGCGGCTACCACGGATTCATCTGCGACTTCACGCCG 283907 Query 145484 TCGATCACCATCGAACAAGACCTGATGCGCCGCGATCTTACCATCAACGCCATGGCAATG 145543 || | || | || |||||||| |||||||| || ||||||||||||||||| | Sbjct 283908 GCGGTGACGCTGGAGGAAGACCTGCAACGCCGCGACCTGACCATCAACGCCATGGCCGAG 283967 Query 145544 TTTATGGATGGTCAAATCATCGATCCGTTCGGCGGCATGGACGATCTGAAAAACAAGGTG 145603 ||||| | ||||||| || | |||||||| | | || || || ||| Sbjct 283968 ACCGCCGATGGCGAGGTCATCGACCCCTGCGGCGGCAGGCAGGACCTCGCCGACCGCGTG 284027 Query 145604 CTTCGCCACGTCAATGCGGAAACCTTCAAGGAAGACCCGCTTCGCGTGCTGCGCGTTGCC 145663 || || ||||| ||| ||||| || |||||||| |||||||||||||| ||| Sbjct 284028 CTCCGGCACGTGTCGCCGG---CCTTCGTCGAGGACCCGCTGCGCGTGCTGCGCGTGGCC 284084 Query 145664 CGTTTC 145669 || ||| Sbjct 284085 CGCTTC 284090 >seq6372 Length=86001 Score = 93.3 bits (102), Expect = 6e-14 Identities = 189/273 (69%), Gaps = 6/273 (2%) Strand=Plus/Plus Query 181370 CTGATCGAAGTGATTGTTGTAGATGTGGGTATCACCAAGGTTGCCGATCAGTTC-CCCGA 181428 ||| |||| ||| ||| ||| | |||| ||||| | | | ||| | || |||| Sbjct 39217 CTGCTCGATGTGGTTGGCGTACAGGTGGCAGTCACCGCCGGTCCAGATGAACTCGCCCGG 39276 Query 181429 CTTCAAGACCACATTCCAGCGCGATCAGATGTGTCAGGAGCGCGTAAGAGGCGATGTTGA 181488 || || | || || || |||| | || | ||||| || ||||| ||||||||||| Sbjct 39277 CTGCAGG-CCGCAGACCTGCGCCACCATCAGCGTCAGCAGGGCGTAGCTGGCGATGTTGA 39335 Query 181489 AGGGAAGCCCCAAGAAGACGTCCACGGACCGCTGATTCCAAAGGCAGGACAGTTTGTCAT 181548 |||| | || | ||||| |||| | || ||||| | |||||||||| ||| | | Sbjct 39336 AGGGCACGCCGAGGAAGATGTCCGCCGAGCGCTGGTAGAGCTGGCAGGACAGCTTGCCGT 39395 Query 181549 TGCGAACATAGAACTGGAA-TCCGTAGTGGCACGGCGGCAAAGCCATTAGATCGACC-GC 181606 | || ||||||||||| || | || || ||||||| ||||| | |||||| || Sbjct 39396 CGGCGACGTAGAACTGGAACAGCGCA-TGACAGGGCGGCAGCGCCATCTGCTCGACCAGC 39454 Query 181607 GCCGACATTCCAAGCCGAGACCATATGACGACG 181639 |||| ||||| |||||||| || |||| || Sbjct 39455 GCCG-GGTTCCAGGCCGAGACGATCAGACGGCG 39486 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 659863603406880