Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_028953.1 Length=110764 Score E Sequences producing significant alignments: (Bits) Value seq4 138 8e-28 seq68 84.2 2e-11 >seq4 Length=924746 Score = 138 bits (152), Expect = 8e-28 Identities = 142/185 (77%), Gaps = 3/185 (2%) Strand=Plus/Plus Query 97343 GGCACGTTGGATTTGATAAGGCCTGTGACTACATCCACGGAGGGCCGCTGCGTCGCCAGG 97402 |||||||||| ||||| ||||| |||| |||||||| ||||| |||||||||||||| Sbjct 542435 GGCACGTTGGCCTTGATCAGGCCGGTGATGACATCCACCGAGGGACGCTGCGTCGCCAGC 542494 Query 97403 ACGAGATGAATACCGGCTGCGCGCGCCTTCTGGGCGATGCGGACAATGTTGGCCTCGACT 97462 ||||| || || ||||| |||||||||||||| ||||||||| | || |||| | Sbjct 542495 ACGAGGTGGATGCCGGCGGCGCGCGCCTTCTGCGCGATGCGGGCGATCAGCTCCTCCA-- 542552 Query 97463 TCTTTCTTGTAGCCGCCCATCATGAGGTCTGCGAGTTCGTCGACCACTACCACGATGTAG 97522 | |||||| | || ||| || | ||| |||| |||||||| | ||||||||| | Sbjct 542553 -CCTTCTTGCCGACGATCATGATCATGTCGGCGAATTCGTCGATAATGACCACGATGAAC 542611 Query 97523 GGGAG 97527 || || Sbjct 542612 GGCAG 542616 >seq68 Length=444459 Score = 84.2 bits (92), Expect = 2e-11 Identities = 123/172 (72%), Gaps = 3/172 (2%) Strand=Plus/Plus Query 97355 TTGATAAGGCCTGTGACTACATCCACGGAGGGCCGCTGCGTCGCCAGGACGAGATGAATA 97414 ||||| ||| |||| || || || || |||||||||||||||| || ||| || || Sbjct 286687 TTGATCGTGCCGGTGATGACGTCGACCGAAGGCCGCTGCGTCGCCATGATGAGGTGGATG 286746 Query 97415 CCGGCTGCGCGCGCCTTCTGGGCGATGCGGACAATGTTGGCCTCGACTTCTTTCTTGTAG 97474 || | || |||||| |||| || | || ||| ||||||| |||||| | | Sbjct 286747 CCCGAGGCCCGCGCCATCTGCGCAAGACGCTGGATGCAAGCCTCGATCTCTTTCCCG--G 286804 Query 97475 CCGCCCATCATGAGGTCTGCGAGTTCGTCGACCACTACCACGATGTAGGGGA 97526 || ||||||| ||||| || | |||||||| | || ||||| ||||||| Sbjct 286805 CC-ACCATCATCAGGTCGGCCATCTCGTCGACGATGACGACGATATAGGGGA 286855 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 353541691387100