Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_028956.1 Length=52139 Score E Sequences producing significant alignments: (Bits) Value seq57114 558 1e-154 >seq57114 Length=6393 Score = 558 bits (618), Expect = 1e-154 Identities = 862/1216 (71%), Gaps = 22/1216 (2%) Strand=Plus/Minus Query 40663 TTGTAGAAGATCAAACCTAATCTGACAGTCCCCCGTTTTAAATTACCGTGTCTGTCAGAT 40722 ||||| || ||| || | |||||||||| |||||||| | | | ||| ||||||| | Sbjct 6163 TTGTACTAGCTCAGACTTGATCTGACAGTTACCCGTTTTTCAAT-CGGTGACTGTCAGTT 6105 Query 40723 TA-ATTTGAGCTTAAATTCTTTTCCACCCAAATCCGTTTTCCATCAAGTAAGGTTGCCAT 40781 || ||||||||| ||||||||||| |||||||| ||| ||||| | ||| ||| ||| Sbjct 6104 TAGATTTGAGCT-AAATTCTTTTCAGCCCAAATCGATTTCCCATCCAATAATGTTTCCAG 6046 Query 40782 CGGTGTTCTGCCACAGCACATTTTTCCTTGATGTGTTCGATGGTGATTATAATACATTAA 40841 || ||||||||||||||||||||||||||||| ||||| | | ||| ||||| | | Sbjct 6045 TGGCGTTCTGCCACAGCACATTTTTCCTTGATGGGTTCGGTCATTATTGTAATAAACCAT 5986 Query 40842 CCACTCATCTAAATCCGCTTGTAATGTCGTTAAATCCGTATAAATTTTCTTCCTAAATGC 40901 ||| || |||| |||| ||||||| | || | ||| | |||||| | |||| Sbjct 5985 CCATTCGTCTAGATCCTTTTGTAATTCCTCTAGCGACCCATACAGTTTCTTGCGGAATGT 5926 Query 40902 CACTTGGTAAAATTCTTGTAAGATTGTTTTATGGAACCGTTCGCAGATACCATTCGTCTG 40961 | || || || || | || || ||||||||||| || || ||||| || || || || Sbjct 5925 AGCCTGATAGAACTCATTCAAAATCGTTTTATGGAATCGCTCACAGATGCCGTTTGTTTG 5866 Query 40962 GGGATGCTTCACTTTCGTTTTCGTATGCTCTATGTCATTTATCGCTAAATAAAGCTCATA 41021 || | | | || ||||| || || || || || |||||||||| ||| | || ||| Sbjct 5865 AGGTGACATAGCCTTTGTTTTTGTGTGATCGATATCGTTTATCGCTAGATATAACTGATA 5806 Query 41022 ATCGTGATTTTCTACCTTGCCACAATATTCACTTCCTCGGTCAGTTAATATGCGTAACAT 41081 || |||| || || || || ||||| ||| | |||| || || | ||| |||| ||| Sbjct 5805 GTCATGATGCTCGACTTTACCGCAATACTCAGTGCCTCTATCCGTGAGTATACGTAGCAT 5746 Query 41082 CGGTAAACCTTGGCTTTCAAAGTATGGTAACACTTTATCATTCAGCATATCCGCAGCACT 41141 || | | || ||| ||||| || | || || || || || || || || || | Sbjct 5745 AGGAAGCTCATGTTGTTCGAAGTAAGGCAGAACCTTGTCGTTAAGTATGTCAGCCGCGGT 5686 Query 41142 GATAGCGGTCTTCATTGTATAAAGTTTTGCAAACGCCACTTTACTGTAAGTATCAATAAA 41201 || | || || | || || || || |||||||| || || ||||| ||||| || || Sbjct 5685 AATCGGCGTTTTGGTCGTGTAGAGCTTCGCAAACGCTACCTTGCTGTAGGTATCGATGAA 5626 Query 41202 CGTTTGTTGATAAATACGACCCACTCCTTTGAGGTTGCCCACATAGAAAGTATCTTGTGA 41261 || ||||| ||||| || || || || |||||||| || |||||||| |||||||| || Sbjct 5625 GGTCTGTTGGTAAATGCGGCCTACACCCTTGAGGTTACCGACATAGAATGTATCTTGCGA 5566 Query 41262 GCCAAGATAGCCAGGGTGTACCGTTTCAATTTCACCACAGGCAATCTCATCTTCTTTCTT 41321 |||||||| || || || | ||||||||||||||||||||| |||||| || ||||| Sbjct 5565 ACCAAGATAACCTGGATGCATCGTTTCAATTTCACCACAGGC---CTCATCATCATTCTT 5509 Query 41322 ACGC---TCTAAGGCTTGTACCTGTGTTTCACTGAGTATAATACCTTGTTCTGCAACCAG 41378 | || || || ||||||| || |||| ||||| |||| || || || Sbjct 5508 TTTCTTTTCAAATGCCGCAACCTGTGCATCCGTGAGGATAATGCCTTCTTGGGCGACTTT 5449 Query 41379 TTTTTCCAGGGCGATTAATCTTTGCTTAAAATTGGCAAGATGATGACGTAACCAAATCGA 41438 | ||||| || | | | | || || || | | || || || | ||| || || Sbjct 5448 TGCTTCCAACGCTTTCAGGCGCTTTTTGAAGTTTTCCAAATCGTGGCGCAGCCAGATTGA 5389 Query 41439 ACGTACACCTCCTGCTGAAACAAAGATGCCTTGTTTACGGAGTTCGTTACTCACTCTTAC 41498 ||| ||||| | |||||||| || | |||||||||||| | |||||||| ||| || Sbjct 5388 ACGCACACCACTGGCTGAAACGAACACGCCTTGTTTACGCAACTCGTTACTGGTTCTAAC 5329 Query 41499 CTGTCCAAATGCCGGGTTATCAAGAGCAAACTTCACAACAGCTTGCTCTATTGCCTCATC 41558 ||| || || |||| |||| || ||| | || |||| || || | ||||| Sbjct 5328 CTGACCGTGAGCGGGGTATTCAACCGCGTACTCCGTGACTGCTTTTTCAGTTTCTTCATC 5269 Query 41559 AACACGATTTTTTAAGTTGGGAACGCGTCTATTTTGATTCAGCAAT----GCTTCAACAC 41614 || |||||||||||||||| |||| |||| ||| | | |||| || |||| | Sbjct 5268 GACGCGATTTTTTAAGTTGG--ACGC-TCTA-CGTGACTTATCAATCAGCGCATCAATGC 5213 Query 41615 CACCTTGCTCAACCGCTTGTTGATAACGATAGAATGTATCTCGGCTCATTCCCATTACTT 41674 | || | || ||| | ||| || ||||| || |||||||| | |||||||||| Sbjct 5212 CGCCATCTTCGACCAGCTCTTGGTAGCGATAAAACGTATCTCGCGAAACGCCCATTACTT 5153 Query 41675 TGCAGGCTTGAGAAATATTACCCAGTTCTTCTGCTAAATTTAATAAACCGGTCTTGTGTT 41734 ||||||| | || | ||||| |||||||| || | ||| | |||||| | ||||||| Sbjct 5152 TGCAGGCCTTTGAGACGTTACCAAGTTCTTCGGCCAGATTGAGTAAACCAGCTTTGTGTT 5093 Query 41735 TAATGAGAGGGTTGTTAGAATAAAACATGAGAGTTTCCTTTTTGTTTAGATTGATTTTTG 41794 | |||| |||||||||| || || |||||||||| ||| ||||||| |||||| | Sbjct 5092 TGATGATTGGGTTGTTAGTATGAAGCATGAGAGTTACCTCTTTGTTTGTTTTGATTAAAG 5033 Query 41795 A--CA-CTCATAT-TCTAAACGGGAAACTCTCACTTTTTAGAGTGAAT-TGTCAGATCAA 41849 | || | | | | || ||||||| |||||||||||||| || ||| ||||||||| Sbjct 5032 ATTCAGCACCTTTATCAAAACGGGTAACTCTCACTTTTTCAAGCTAATGTGTCAGATCTT 4973 Query 41850 GTCTGATCTTCTACAT 41865 || ||| || ||||| Sbjct 4972 GTTTGAACTAATACAT 4957 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 166366361918232