Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_028976.1 Length=50113 Score E Sequences producing significant alignments: (Bits) Value seq363 205 3e-48 seq27787 143 9e-30 seq1 138 4e-28 seq7 87.8 6e-13 seq53823 82.4 2e-11 >seq363 Length=289854 Score = 205 bits (226), Expect = 3e-48 Identities = 543/811 (67%), Gaps = 44/811 (5%) Strand=Plus/Plus Query 38276 GGCGGCAGGACCCGAAGGCCCATGCGCCTGCACTCGCCGAGGTACGTGGCCATCTTGTTC 38335 |||||| ||| | ||||||||| | ||||| ||| | || | ||||||| Sbjct 187263 GGCGGCCGGATCTTCAGGCCCATGGCGCGACACTCCTCGATGAGGGTCACGATCTTGTCG 187322 Query 38336 TTGTCGTCGCCCACCGAGGTGAGCACGGCCGCCATGTACTCGGCCGGGTAGTGCGTCTTC 38395 ||| | | |||| | ||||| ||||||||| ||||||||||||| ||| ||| Sbjct 187323 GTGTTGGCCATTTCCGACGACAGCACCGCCGCCATGAACTCGGCCGGGTAATGCACCTTG 187382 Query 38396 AGGTACGCCGTGCGGTAGGCGATGAGTCCGTACGCCGCAGAGTGCGCCTTGTTGAAGGCG 38455 || | || || |||| | | || |||| || || ||||||| |||||||||| || Sbjct 187383 AGCCAGGCGGTCTGGTACGACACCAGCGCGTAGGCGGCCGAGTGCGACTTGTTGAAGCCG 187442 Query 38456 TACCCGGCGAAGGGTACGAGCACGTCCCACA--CCGCCCGGATGG-CAGCGTCCGAGTAG 38512 || |||||||| | | | ||| | | ||||| | ||| | | ||| | | Sbjct 187443 TAGCCGGCGAACTTCTCCATGAGGTCGAAGATGCCGCCGGCCTGGTCCGGGTC---GACG 187499 Query 38513 CCTCGCTCGCTTGCTCCCTTCTGGAAGTTCACGAACTCCTTGGCCAGCACCTCGGGCTTC 38572 || ||||||| | || | | ||| || ||| ||||||||||| ||||||||||| Sbjct 187500 CCGCGCTCGCCCGAACCTTCCATGAACTTGACGCGCTCCTTGGCCATTTCCTCGGGCTTC 187559 Query 38573 TTCTTGCCCATGGCGCGACGGAGAAGGTCGGCCTGACCGAGGGTGTACCCGGCCAGGATC 38632 ||||||||||||||||| ||||| | |||||| || || | || |||||||| | | Sbjct 187560 TTCTTGCCCATGGCGCGGCGGAGCATGTCGGCGCCGCCCAGCGAATAGCCGGCCAGCACC 187619 Query 38633 TGCGCCGCCTTCTGCACCTGCTCCTGGTAGATGATGAGCCCGAAGGTCGGGTCCAGGATC 38692 || || || | |||||| |||||||||| ||||| ||| |||| | || Sbjct 187620 TGGGCGATCTGCATCACCTGATCCTGGTAGAGGATGACACCGTAGGT---------GTTC 187670 Query 38693 TCGGCCAGCGGCTCCTCCACCTCGGG--GTGGATCGGCGTGATCTCCTGCTGCCCGTTCT 38750 | ||||| | ||||| |||||| | |||| ||| || | || | |||| || Sbjct 187671 T---CCAGCACCGGCTCCAGCTCGGGATGCGGATAGGCCACGTCGGC-GC-GGCCGTGCT 187725 Query 38751 TGCGGAGGGCGTAGTTCGT-GTGCGAGCCCATGCCCATCGGACCCGGACGGTACAGCGCC 38809 ||||| | | || |||| | | |||| ||| ||||||||| || ||||||||| Sbjct 187726 TGCGGTTGATGAAG-TCGTCGACCATGCCCGACTCCAGCGGACCCGGGCGATACAGCGCC 187784 Query 38810 ACGACGGCGGAGATGTCCTCGAACTGGTCCGGCTTCAGCAGGCGGAGCAGGGAGCGCATC 38869 || | || | ||||||||| | ||||| ||| || ||| | || Sbjct 187785 ACCAGTGCCACCACGTCCTCGAAGCGCGAAGGCTTGAGCTTCTTGATCAG---CTCCTTC 187841 Query 38870 GCGCCGC-CG--TCGAGCTGGAACACCGAGAGCGTGTCGCCCCTGGCCAGCAGCTCGTA- 38925 ||||| || |||||||||||||| | | || | |||| || || |||| ||| Sbjct 187842 ATGCCGCGCGATTCGAGCTGGAACACGGCGGTGGTCTTGCCCTCGGACATGAGCTGGTAG 187901 Query 38926 CGTCGCGGGGTCATCCAGCGGGATGTTCTCGATGTCGA-CG--TGCTC-ACCACGGTTGC 38981 | ||| ||||||| ||||||||| ||||||||||| || | || ||| || || Sbjct 187902 GGACGC-GGGTCATTGAGCGGGATGCGCTCGATGTCGATCGGCGGTTCGCCCAGGGCGGC 187960 Query 38982 ------GGCG--GATGTTCTCGACCGCGTCGCCCATGATCGTGAGGTTCCGGAGCCCGAG 39033 |||| ||||| || | ||| | | ||||| || || | || || ||||| Sbjct 187961 GCGCTTGGCGTTGATGTCCTTCAGCGCCCAGTCGATGATGGTCAGCGTGCGCAGGCCGAG 188020 Query 39034 GAAGTCCATCTTCAGCAGGCCCAGAGCCTCG 39064 |||||| | ||| | |||||||| |||||| Sbjct 188021 GAAGTCGAACTTGACCAGGCCCACGGCCTCG 188051 Score = 181 bits (200), Expect = 3e-41 Identities = 283/403 (70%), Gaps = 4/403 (1%) Strand=Plus/Plus Query 39375 AGGGCTTGTCCAGCACGCGGGCCGCGTCCTTCATCGCGTTGCGGGCCTTGATCCTGCCGT 39434 ||| |||| || ||||||| ||| |||| || | || ||| || ||||| Sbjct 188344 AGGACTTGCCCTGCACGCGCGCCACGTCGCGCACCACGGCCTTCGCCGCCATGGTGCCGA 188403 Query 39435 ACGTCGCGATCTGTGCGACCTTGTCGCTGCCGTACTTCTCGGTGACGTACCGGATCACGT 39494 | || |||||| | ||| |||| |||||| | | ||| |||||| ||| ||| Sbjct 188404 AGGTGATGATCTGCGACACCGCTTCGCGGCCGTAGTGCCCGGCCACGTACTCGATGACGC 188463 Query 39495 CGCCACGGCGACGGTCATC--GAAGTCGATGTCCACGTCGGGCATGGAGACGCGCTCAGG 39552 | | || | | ||| |||||||||||| | |||||||||||| |||||||| || Sbjct 188464 GGTCGCGCC--CTTCCATGCAGAAGTCGATGTCGAAGTCGGGCATGGACACGCGCTCGGG 188521 Query 39553 GTTCAGGAACCGCTCGAAGATGAGCCCGTGAGGGATGGGGTCCAGGTCGGTGATCCCGAG 39612 || ||||| |||||||| | || ||| ||| || |||||||||||||| || Sbjct 188522 ATTGAGGAAGCGCTCGAACAGCAGGTCGTACTTGATCGGATCCAGGTCGGTGATGAACAG 188581 Query 39613 GGCGTACGCGGCCAGCGAGCCAGCCGCAGAGCCACGCCCAGGGCCGACCCACACACCGTT 39672 | ||| || |||||||||| || | || || || || || || ||| ||| ||||| Sbjct 188582 CGAGTAAGCCACCAGCGAGCCGGCGCCGGAACCGCGACCCGGCCCCACCGGCACGCCGTT 188641 Query 39673 CTCCTTCGCCCAGCCGATGAAGTCGGCGACGACGAGGAAGTACGACGGGAACCCCATCTG 39732 | ||| ||||||| ||||||||| ||||| |||||||| ||| || |||||||| Sbjct 188642 GTTCTTGGCCCAGCGGATGAAGTCCATGACGATCAGGAAGTAGCCCGGAAAACCCATCTG 188701 Query 39733 GTTGATCATGTCGATCTCGTAGTCGACCTGCGTTCGGTGCTCG 39775 |||||| |||| || |||| | || | ||| |||| |||| Sbjct 188702 GTTGATGATGTTGAGCTCGAACTCCAGGCGCGCGCGGTACTCG 188744 >seq27787 Length=17407 Score = 143 bits (158), Expect = 9e-30 Identities = 228/323 (71%), Gaps = 12/323 (4%) Strand=Plus/Plus Query 38366 GCCATGTACTCGGCCGGGTAGTGCGTCTTCAGGTACGCCGTGCGGTAGGCGATGAGTCCG 38425 |||||| || ||||||||||||| ||| || | || || |||||| || || || Sbjct 1 GCCATGAACGGCGCCGGGTAGTGCGCCTTGAGCCAGGCGGTCTGGTAGGAGACCAGGCCA 60 Query 38426 TACGCCGCAGAGTGCGCCTTGTTGAAGGCGTACCCGGCGAAGGGTACGAGCACGTCCCAC 38485 || || || ||||||| |||||||||| |||| |||||||| | | | || ||| | Sbjct 61 TAGGCTGCGGAGTGCGACTTGTTGAAGCCGTAGCCGGCGAACTTTTCTACCAGGTCAAAG 120 Query 38486 A-----CCGCCCGGATGGCAGCGTCCGAGTAGCCTCGCTCGCTTGCTCCCTTCTG-GAAG 38539 | ||| || | | | ||||| || | | | | || | ||||| |||| Sbjct 121 ATGTTACCGGCCAGTT--CCGCGTCGATGTTG--TTGTTGGCA--CAACCTTCGATGAAG 174 Query 38540 TTCACGAACTCCTTGGCCAGCACCTCGGGCTTCTTCTTGCCCATGGCGCGACGGAGAAGG 38599 || || |||||||| | |||||||||||||||||||||||||||| || || | | Sbjct 175 CCGCCGCGCTGCTTGGCCATCTCCTCGGGCTTCTTCTTGCCCATGGCGCGGCGCAGCATG 234 Query 38600 TCGGCCTGACCGAGGGTGTACCCGGCCAGGATCTGCGCCGCCTTCTGCACCTGCTCCTGG 38659 || |||||||| ||||| || || ||| || ||| || || | |||||| |||||| Sbjct 235 TCCGCCTGACCCAGGGTATAGCCACCCATGACCTGGGCGATCTGCATCACCTGTTCCTGG 294 Query 38660 TAGATGATGAGCCCGAAGGTCGG 38682 || | ||||| ||| ||||||| Sbjct 295 TACAGGATGATGCCGTAGGTCGG 317 >seq1 Length=1655743 Score = 138 bits (152), Expect = 4e-28 Identities = 219/312 (70%), Gaps = 4/312 (1%) Strand=Plus/Minus Query 39442 GATCTGTGCGACCTTGTCGCTGCCGTACTTCTCGGTGACGTACCGGATCACGTCGCCACG 39501 |||||| | |||||||||| ||| || || || || |||||||| || | || Sbjct 660895 GATCTGCCCCACCTTGTCGCGGCCATAGCGTTCCTGCACATAGCGGATCACCTCTTCGCG 660836 Query 39502 GCGACGGTCATC--GAAGTCGATGTCCACGTCGGGCATGGAGACGCGCTCAGGGTTCAGG 39559 |||| ||| |||||||||||| | ||||||||| || || || || ||||||||| Sbjct 660835 GCGATC--CATGCAGAAGTCGATGTCGAAGTCGGGCATCGACACCCGTTCCGGGTTCAGG 660778 Query 39560 AACCGCTCGAAGATGAGCCCGTGAGGGATGGGGTCCAGGTCGGTGATCCCGAGGGCGTAC 39619 || || ||||| | ||| | | | | ||||| || |||||||| || || || Sbjct 660777 AAGCGTTCGAACAGCAGCGCATAGCGCAGCGGGTCAAGATCGGTGATGGTCAGCGCATAA 660718 Query 39620 GCGGCCAGCGAGCCAGCCGCAGAGCCACGCCCAGGGCCGACCCACACACCGTTCTCCTTC 39679 || |||| ||||| || | || || ||||| || |||||| | | | | |||| Sbjct 660717 GCCACCAGAGAGCCTGCACCCGACCCCCGCCCCGGACCGACCGGGATGGCATGCGCCTTG 660658 Query 39680 GCCCAGCCGATGAAGTCGGCGACGACGAGGAAGTACGACGGGAACCCCATCTGGTTGATC 39739 ||||| |||||| ||||| |||| ||||||||| ||| ||| |||| | | ||| Sbjct 660657 GCCCATTTGATGAAATCGGCCACGATGAGGAAGTAGCCCGGAAACTTCATCCGCTCGATA 660598 Query 39740 ATGTCGATCTCG 39751 ||||||| |||| Sbjct 660597 ATGTCGAGCTCG 660586 Score = 86.0 bits (94), Expect = 2e-12 Identities = 96/127 (76%), Gaps = 1/127 (1%) Strand=Plus/Minus Query 38548 CTCCTTGGCCAGCACCTCGGGCTTCTTCTTGCCCATGGCGCGACGGAGAAGGTCGGCCTG 38607 ||| || |||| | |||||| | ||||||||||||||||| || ||||||||||| Sbjct 661798 CTCTTTTGCCATCTCCTCGGCGATTTTCTTGCCCATGGCGCGGCGCAGAAGGTCGGCGCC 661739 Query 38608 ACCGAGGGTGTACCCGGCCAGGATCTGCGCCGCCTTCTGCACCTGCTCCTGGTAGATGAT 38667 |||||| |||| || |||| || ||| || || | |||||| ||||| || | ||| Sbjct 661738 GCCGAGGCTGTAGCCCGCCATGACCTGTGCAATCTGCATCACCTGTTCCTGATAAACGAT 661679 Query 38668 GA-GCCC 38673 || |||| Sbjct 661678 GATGCCC 661672 >seq7 Length=747525 Score = 87.8 bits (96), Expect = 6e-13 Identities = 204/305 (67%), Gaps = 2/305 (1%) Strand=Plus/Plus Query 39443 ATCTGTGCGACCTTGTCGCTGCCGTACTTCTCGGTGACGTACCGGATCACGTCGCCACGG 39502 ||||||| ||| |||| ||| ||| ||| | ||||| |||||| || | ||| Sbjct 503392 ATCTGTGATACCGCTTCGCGGCCATACAGCTCTGCGACGTGATCGATCACCTCATCGCGG 503451 Query 39503 CGACGGTCATCGAAGTCGATGTCCACGTCGGGCATGGAGACGCGCTCAGGGTTCAGGAAC 39562 ||| | |||||||| ||| | ||| ||||| || || ||||| ||||| | || Sbjct 503452 CGATCCATACAGAAGTCGACGTCGAAGTCTGGCATCGACACCCGCTCCGGGTTTAAAAAA 503511 Query 39563 CGCTCGAAGATGAGCCCGTGAGGGATGGGGTCCAGGTCGGTGATCCCGAGGGCGTACGCG 39622 || ||||| | || | | || ||||| ||||| || || || || || Sbjct 503512 CGTTCGAAAAGCAGGTCAAACTCAAGCGGATCCAGATCGGTAATTTTTAGCGCATAAGCT 503571 Query 39623 GCCAGCGAGCCAGCCGCAGAGCCACGCCCAGGGCCGACCCACACACCGTTCTCCTTCGCC 39682 |||||||||| || | || || ||||| ||||| ||| | | |||| ||||| | Sbjct 503572 ACCAGCGAGCCGGCGCCGGAACCCCGCCCCGGGCCAACCGGAATATCGTTATCCTTACTC 503631 Query 39683 CAGCCGATGAAGTCGGCGACGACGAGGAAGTACGACGGGAAC-CCCATCTGGTTGATCAT 39741 || || || || || || |||||||| | |||||| ||||||||||| |||| Sbjct 503632 CACTGAATAAACTCCATTACAACCAGGAAGTA-GCCGGGAAAGCCCATCTGGTTAATCAC 503690 Query 39742 GTCGA 39746 |||| Sbjct 503691 ATCGA 503695 >seq53823 Length=7075 Score = 82.4 bits (90), Expect = 2e-11 Identities = 105/145 (72%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 38535 GGAAGTTCACGAACTCCTTGGCCAGCACCTCGGGCTTCTTCTTGCCCATGGCGCGACGGA 38594 ||||| || || | |||||||| | | ||| |||||||||||| ||||| || | Sbjct 6971 GGAAGATCTCGCGGTGCTTGGCCATTTCGGCAGGCACCTTCTTGCCCATCGCGCGGCGCA 6912 Query 38595 GAAGGTCGGCCTGACCGAGGGTGTACCCGGCCAGGATCTGCGCCGCCTTCTGCACCTGCT 38654 | |||||||| || || | ||| ||| | | |||||||||| || | |||||||| Sbjct 6911 GCAGGTCGGCGCCGCCCAGCGAGTAGCCGCCGACGATCTGCGCCATCTGCATCACCTGCT 6852 Query 38655 CCTGGTAGATGATGAGCCCGAAGGT 38679 ||||||| | |||| ||| |||| Sbjct 6851 CCTGGTACACCATGATGCCGTAGGT 6827 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 159897037927400