Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_029013.1 Length=177688 Score E Sequences producing significant alignments: (Bits) Value seq5 223 4e-53 seq100896 100 3e-16 >seq5 Length=869209 Score = 223 bits (246), Expect = 4e-53 Identities = 331/468 (71%), Gaps = 6/468 (1%) Strand=Plus/Minus Query 77130 GGGCTGAACAGTGTGATGTAATCGTTATTGATTAAACGCTTATACATCAAATCGTTAAGC 77189 |||||||||| ||||| || || | || || | |||| |||||||| ||||| | Sbjct 711216 GGGCTGAACAAGGTGATATAGTCATCTTTAATCAGGCGCTGATACATCAGGCGGTTAAAC 711157 Query 77190 TGAACGCCATAATCCAGGTGACGAATACGGTTATTCTCAACACCTTTGTTGTTTTTCAGA 77249 || |||||||| ||||| || | | ||||| | || ||||| ||| |||||||| Sbjct 711156 TGCACGCCATAGTCCAGATGCCTTACCCGGTTCTCTTCTACACCGCGGTTATTTTTCAGT 711097 Query 77250 ACCAGCAGGTTTTCAACTTCCAAATGCCAGATCGGATAATACAACGTTGCAGCACCACCA 77309 |||||||| ||| ||||||| |||||| | || || ||| || || ||||||||| Sbjct 711096 ACCAGCAGCGATTCCACTTCCAGATGCCACAAGGGGTAGAACAGGGTGGCGGCACCACCA 711037 Query 77310 CGAACGCCACCTTGTGAACAGGATTTAACCGCTGTCTGAATATGTTTCCAGAACGGGATC 77369 || || || ||||| || ||| ||| || || ||||| | ||| || | |||||||| Sbjct 711036 CGCACACCGCCTTGCGAGCAGCTTTTTACTGCGGTCTGGAAATGCTTATAAAACGGGATA 710977 Query 77370 ACGCCTGTATGTACTGCTTCACCACCACGGATTTTAGAACCCATTGCGCGAATGTGTCCA 77429 ||| ||||| | ||||| ||| ||||||| ||| | |||||||| | || Sbjct 710976 CAGCCAGTATGAAAGGCTTCGCCATTACGGATTGGGCTACCTAAAGCGCGAATACGGCCT 710917 Query 77430 GCATTAACACCGATACCCGCGCGTTGTGAAATATACTTCACGATCGCA---GAGGTTACA 77486 || |||| ||| ||||| ||||| || || | || || || || ||| ||||| Sbjct 710916 GCGTTAATACCAATACCTGCGCGCTGCGACACGTATTTTACAATGGCACTGGAGGT---G 710860 Query 77487 GCATTCAGAGAACCCAGTGAATCACCTGATTCAATCACTACGCAACTGGAAAACTGACGC 77546 ||||| | ||| |||| ||||| | ||||||| |||||| | |||||||| Sbjct 710859 GCATTGATCGAATCCAGGCTGTCACCACACTCAATCAGTACGCAGGAGCTGAACTGACGG 710800 Query 77547 GTAGGAGTACGCACACCCGCCATAATAGGCGTAGGTAACGACAGCTTA 77594 || || |||||||| |||| ||||||||| || || | || | |||| Sbjct 710799 GTTGGGGTACGCACGCCCGACATAATAGGTGTCGGCAGTGAAATCTTA 710752 Score = 82.4 bits (90), Expect = 9e-11 Identities = 144/207 (70%), Gaps = 6/207 (3%) Strand=Plus/Minus Query 75059 TTCTTCTTCGTACTGATACGCGATTTCTGCCATTTCTGGGTCATCTTTACCCATCTGCCA 75118 ||| |||||| ||| | || ||||| |||||||| || ||||| | ||| | |||| Sbjct 713314 TTCCTCTTCGCACTCTTTGGCAATTTCCGCCATTTCCGGATCATCATCACCGCTG-GCCA 713256 Query 75119 GAGT---CGGATCTTGCTTTGAGTACCTTTCTGATGAAGTGCTTCATCACGGGCAATCAG 75175 || | | | |||| |||| || | | || || |||||||| ||||||||||| Sbjct 713255 GAATATTCAGCATATGCT--GAGTGCCGGTGAGGTGTAGCGCTTCATCGCGGGCAATCAG 713198 Query 75176 ACGCATGATCTTCGCGTTACCTTCCATCTTGCCCTGTTCGGCAAAGTTGAAAGTAAAGGT 75235 || || ||||| || || ||||||||| | | || ||||| ||| | ||| Sbjct 713197 CCGGATAATCTTAGCATTCCCTTCCATCAGCTCACGCTCAGCAAAAGCAAAACTGCAGGC 713138 Query 75236 AAACGAGACATAGAAACGGATCGCTTC 75262 ||| |||||| || ||||||||||| Sbjct 713137 AAAGCTGACATAAAAGCGGATCGCTTC 713111 >seq100896 Length=2131 Score = 100 bits (110), Expect = 3e-16 Identities = 136/187 (73%), Gaps = 2/187 (1%) Strand=Plus/Minus Query 75995 TGCACCGTCGCGGGTGTTGTGATAATACAGAGTTTTCACGCCGTAGTAGTTCGCATAAAG 76054 |||||| || || ||||||||||| ||||||||||| || || | | |||| || Sbjct 384 TGCACCATCACGTGTGTTGTGATAGTACAGAGTTTTAACACCAAGTTTATACGCAGTCAG 325 Query 76055 CAGGTCATC-AATGATGGTTTCAGATTTCACTTTACCATCTGGGAAGTTAGCCGGATCAT 76113 ||||| | ||| |||| | | |||||||| || | | |||| ||||||| Sbjct 324 TAGGTCTTTTAATAGCACCTTCATAGGT-ACTTTACCGCCTTCGTACTTAGATGGATCAT 266 Query 76114 AGTTGGTGTTTGCAGAGATCGCTTGATCAACAAACTTCTGCATAACAGCAACATGAGACA 76173 |||| |||||||||||||||| ||| ||||| || || ||||||| | ||||| | | Sbjct 265 AGTTAGTGTTTGCAGAGATCGTTTGGTCAACGAATTTTTGCATAATACCAACAAGTTGTA 206 Query 76174 GATAACC 76180 ||||||| Sbjct 205 GATAACC 199 Score = 96.9 bits (106), Expect = 4e-15 Identities = 182/265 (69%), Gaps = 2/265 (1%) Strand=Plus/Minus Query 75524 GTTACGCTGAATATGCGTATAACTGCGACTGTGAATTGTTTCACTGAAAGCCCATGTTTC 75583 |||||| ||| ||||| || || || ||||| ||||||||||| ||||||||||| Sbjct 913 GTTACGAATAATGTGCGTGTATGAACGGCTATGAATGGTTTCACTGAACGCCCATGTTTC 854 Query 75584 GATCCACGTTTCCATTGAAACATCAGAGGCAATCGGGAGAAACGCCAGGTTAGGGCCGCG 75643 ||||| ||||| | | | ||| |||| || | ||||| | |||||| || Sbjct 853 AATCCAAGTTTCTAACTCAGGAATAGACACAATAGGTAATAACGCAACGTTAGGTGAACG 794 Query 75644 TCCCTGAATGGTATCTAACAGGGTTTGATATTGCAGGTTAGAATCAAAAATGATTTTTTC 75703 || || | |||| | || |||||||||| | |||| ||| ||| ||||| Sbjct 793 GCCTTGTACACTATCAAGAAGCGTTTGATATTTTAAGTTACTTAAAAATATGTGCTTTTC 734 Query 75704 GTGTTCCGG-CATTTTTGCATACTGCATACGGTCTATCGACAGATCCACTTCTTCCGGTC 75762 |||||| || | ||| | | | | ||||||| | | ||| |||||||| || | Sbjct 733 GTGTTCTGGTAACGCTTGGA-AGTCAAGACGGTCTTTACTTACATCAACTTCTTCAGGAC 675 Query 75763 GCCAGAAGAATGACAGTTGTTTTTC 75787 |||| ||||| || ||||| ||||| Sbjct 674 GCCAAAAGAACGAAAGTTGCTTTTC 650 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 567192857402880