Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_029066.1 Length=48666 Score E Sequences producing significant alignments: (Bits) Value seq11269 850 0.0 seq10932 190 6e-44 seq30225 140 1e-28 seq32920 102 3e-17 seq81150 96.9 1e-15 >seq11269 Length=54388 Score = 850 bits (942), Expect = 0.0 Identities = 1074/1458 (74%), Gaps = 42/1458 (3%) Strand=Plus/Plus Query 5092 AACAGGGCCAGCCACACGCCGCCATCGTCAGAGCGA---GGGCAGCCGGCCGGGTTGAAT 5148 ||||| || ||||| || ||||||||||| || || ||||| || ||||||||||| Sbjct 42093 AACAGCGCAAGCCAGACTCCGCCATCGTCTGATCGTTGCGGGCAACCTGCCGGGTTGAAG 42152 Query 5149 GAAGCGTCCAGCTTCAGCCGAAACCCTTTCGATGT-CTG--GATCACCGCTCCAACATTC 5205 | || || || |||||||| |||||||| || ||| |||||| || || || Sbjct 42153 CACGCATCGAGTTTCAGCCGGTACCCTTTCTGCGTGCTGACGATCACG---CCGACCTTG 42209 Query 5206 CGGGTGACGTACTTGGTCTGGCCGTCCTTCTCGTACTGGCCAATGGTTGCTACCACGTCA 5265 ||| | | ||||||| |||||||||||||||||||||||||| ||| || || ||||| Sbjct 42210 CGGTTCAGGTACTTGACCTGGCCGTCCTTCTCGTACTGGCCAACGGTGGCCACGACGTCG 42269 Query 5266 TATCGCTTACTCATGCCGCCTTACTCCTCATGCGCTCTCGCATTTCGTGTTCAAGTTCTG 5325 ||| | ||||||| || || |||||||||||||||||| | |||||||| |||| Sbjct 42270 TATTTCACGCTCATGCTGCTTT---CCTCATGCGCTCTCGCATCTGATGTTCAAGCTCTG 42326 Query 5326 CCAGCTCTTCGAGGAAGAGCTTGATCTCGGTTTCCATCTGCCGAATGCGTGCCTCGTCTC 5385 ||| |||||| ||||| || | ||||| ||||||| ||||||||| ||||||| | Sbjct 42327 CCAACTCTTCCAGGAACGCTTTAACCTCGGACTCCATCTCGCGAATGCGTTCCTCGTCGC 42386 Query 5386 GCTCCAGGCGGAAGCAGGCGTACTGCAGTTCATCCGGCAGGCGGTCGTCGAAGGTCACGA 5445 | | ||||||||| ||||||||| |||||| ||||| |||||||||||| |||||| Sbjct 42387 GGTGGTAGCGGAAGCACACGTACTGCAATTCATCAGGCAGACGGTCGTCGAAGCTCACGA 42446 Query 5446 AGTCGACCCACTCCAGATCGGCGCAAGCCATCTGCGCGAACATCTGCCATTCGTACTGCG 5505 ||||||||||||| | || ||| | ||| || |||| ||||||||| |||||||| | Sbjct 42447 AGTCGACCCACTCGCGGCCGCTGCATGACATTTGGGCGAGCATCTGCCACTCGTACTGTG 42506 Query 5506 GGTCATGCTTGCCGGATTGGATAGTGGCGACGTGGGTGGCCGTATTCGGGCATTTGATCT 5565 |||| |||||||| || || || ||| || |||||| || ||| ||||||||| |||| Sbjct 42507 GGTCGTGCTTGCCCGACTGCATCGTGTAGATGTGGGTTGCGGTAGACGGGCATTTAATCT 42566 Query 5566 CGAGGCCGCCGCGGGCGGACAGGATCAGGCCGTCTGGCGAAGCACCGAAGCCTTCGATCG 5625 ||| | ||| | || | | ||||| |||||||| || || || || ||||| Sbjct 42567 CGACG-AGCC-CATGCTCCCCCG-CGAGGCCATCTGGCGACGCGCCAAATCCATCGATTC 42623 Query 5626 ATGGGTGCAGGATCAGGCCGGCTTCGGAGATCATCACGCCCTTGTCGAGCTCGTAGGCCG 5685 || || | ||||||||| | |||| |||| ||||| | || ||||||||||| Sbjct 42624 GCGGATGGATGATCAGGCCTGTTTCGATCGTCATTACGCCTGCATTGAACTCGTAGGCCG 42683 Query 5686 ACCGGGCTACTGGCTCCAGCTCTGTGCCGCGTTGCATTGCTGCGCTGGTGAAGCCTTCTT 5745 | || || | |||||||| || || || || |||||||| ||||||||||| ||||| | Sbjct 42684 AGCGAGCAATCGGCTCCAGGTCGGTACCACGCTGCATTGCGGCGCTGGTGAATCCTTCCT 42743 Query 5746 CGCGCTTGCCTGTAAGGCGCTCGCACAGCAGCTGCATCATGTAGTTCTGCCGGGTAGCAG 5805 |||||||||| || |||||||||||||| |||||||||||||||||||| |||||||||| Sbjct 42744 CGCGCTTGCCGGTCAGGCGCTCGCACAGGAGCTGCATCATGTAGTTCTGGCGGGTAGCAG 42803 Query 5806 AAGGGGCGCTTCCGCGCCCCTTGCTCATCACATCCTTGACCTTACTGGCCGTCACCTTTC 5865 ||||||||| | ||||||||| |||||||||||||||||| |||||||||||| | Sbjct 42804 AAGGGGCGCCACTGCGCCCCTTTGCCATCACATCCTTGACCTTGCTGGCCGTCACCCGCC 42863 Query 5866 CTAGGCGGGCGGAAAACCACTCATTGCTGTGCTGGTC---CATCTTCGTTCTCCACGAGC 5922 | ||||| | ||||| |||| || |||| || |||| || ||||| ||| Sbjct 42864 CCAGGCGCTGTGCGAACCATTCATCACTACGCTGCTCGATCATCGCCGGTCTCCTCGAAT 42923 Query 5923 TCGCCTTCGATCGGTTCG--CTG-AGCGCTTTCTTGCGTTCATCCTTCACGGCGGTTAG- 5978 || | ||||| || || | | || ||||||| || | ||||| | || || || Sbjct 42924 TCAACGTCGATAGGGGCGTCCAGCAGTTCTTTCTTCCGCTGGTCCTTGGCCGCCGTAAGC 42983 Query 5979 -------GCGCGCCCTGGCCGAAGGATGCTGGTTCCATGCGGCTTTGAATGCTGCGTGCA 6031 ||||||||| | | ||| ||||| || ||||||||| |||| Sbjct 42984 TGGTCGCGCGCGCCCTTTGTCTTGTAGGCT--TTCCAGGCATTGCTGAATGCTGACTGCA 43041 Query 6032 GCTCTTCCATGCTGCTCGCGTTCTTGATCGCCTCGAGCGCTGGAGTGATGTCCGGCTCGT 6091 |||||||| | | || |||||| || ||| ||| |||| | | Sbjct 43042 AGTCTTCCATTGTTGGGGAGTCCTTGATGAGGCAGACCGCCTCGCTGACGTCCTCGTACT 43101 Query 6092 TTACTGCAGGCGTCACGTCCTTCTCGACGATCCGTTGCGCTTCGTCTTCGTCAAAGATGC 6151 | |||| || || ||||| || |||||||| | || ||||| | ||| | |||| Sbjct 43102 GTTCTGCGGGAGTGACGTCTCGTTCAACGATCCGCTCGGCCTCGTCCTGGTCGTATATGC 43161 Query 6152 CGGTGTAGCCAAAGGCGAGTCGGGCGCACTGGATCATGGCTTTGTGGCGCAGCATCCGCT 6211 ||| | | || || ||||| || |||||||| ||||| || |||||||||| ||| |||| Sbjct 43162 CGGCGAACCCGAACGCGAGGCGTGCGCACTGAATCATTGCCTTGTGGCGCAACATGCGCT 43221 Query 6212 TCGGATGGCTCTGCCAGGGCTGGGTGTTGCGCTTGCACTCGGCCATCCATTCGGTGACCT 6271 |||| || |||||| ||||||||||||||||| ||||| | ||| | ||||||| Sbjct 43222 TCGGGTGCGACTGCCATGGCTGGGTGTTGCGCTTACACTCCGACATGTACTCGGTGATGG 43281 Query 6272 TGATTGGGTGATTGCGGTCCTTGCGATAGATGATGCAGGTGCA-TGACT--CGTCGTCCT 6328 || | ||||| || ||||| || |||| ||| ||||||| | | || |||| || Sbjct 43282 TGGTCGGGTGCTTACGGTCTTTCCGATGGATTCGGCAGGTGTACTCGCTTCCGTCAGCCG 43341 Query 6329 G---CTGGAAGTCCATCCCATCGAAC-GCGCCATTTTCATTAATGATCCGCGACCATCCG 6384 | || ||| ||||| ||||||||| ||| | ||| || |||||||||||||| ||| Sbjct 43342 GCATCTCGAAATCCATGCCATCGAACTGCG-GGTGTTCGTTGATGATCCGCGACCAGCCG 43400 Query 6385 TCCACGCCTACGACCGGCACGATGCC---TCCCTTATCCGGGAAGGCATAGATCTCCTTC 6441 |||| ||| || |||||||| ||||| ||| || |||||||| || | ||| || Sbjct 43401 TCCAGGCCAACTACCGGCACAATGCCGTTGTTCTTGTCGGGGAAGGCGTACAACTCTTTG 43460 Query 6442 GTCCAGGGGTTCAGGCCGTACTGGTCAGCGACGATCAGGAGCGCCTGCATCTGCGCGTCG 6501 || |||||||||| ||||||||| || |||||||| || || |||||||||||| Sbjct 43461 GTGAAGGGGTTCAGCTTGTACTGGTCGGCTACGATCAGCAGGGCAACCATCTGCGCGTCA 43520 Query 6502 CTGACTTGGCCCTTGAAG 6519 || || || ||||||||| Sbjct 43521 CTTACCTGTCCCTTGAAG 43538 >seq10932 Length=55943 Score = 190 bits (210), Expect = 6e-44 Identities = 447/661 (68%), Gaps = 19/661 (3%) Strand=Plus/Plus Query 24272 CGTGGCGGCACGCTGCGTTACCTGCACGTCTCCGAGTTCGGAAAGATCTGCGCCAAGTTT 24331 |||||||||||||| | |||||| ||||| |||||||| ||||| ||| ||||| Sbjct 29218 CGTGGCGGCACGCTACAGCGCCTGCATGTCTCGGAGTTCGGCAAGATTTGCCGCAAGTAC 29277 Query 24332 CCGCACAAGGCGCGCGAGATCGTCACTGGTGCGTTTGAGGCGGTGGCTACTGACTGCTTC 24391 ||| |||| || |||||||| ||||| || || |||||||||| | | Sbjct 29278 CCGGACAAAGCCAAGGAGATCGTGACTGGCGCCTTCGAGGCGGTGGGGTTGGGCAATCAG 29337 Query 24392 GTCACCATCGAATCGACGGCAGAGGGGCGGGCAGGGTACTTCTTCGATTACTCGCAGGCC 24451 | || | |||||||| ||||| ||||| | || ||||||||||| |||| | | | Sbjct 29338 TTGACGCTGGAATCGACAGCAGAAGGGCGCGAGGGCTACTTCTTCGACTACTGCGATGAC 29397 Query 24452 GCTGAGAAGCAACAGGCCGCA---AAGCAGCCGCTCGGCAAGCTGGACTGGAAGTTCTTC 24508 || |||||| | ||| || ||| ||| | || | |||||| ||||| Sbjct 29398 GCACAGAAGCTGCTGGCGGCCGGCAAGGTACCGA-CAGCGA--TGGACTTCCAGTTCCAT 29454 Query 24509 TTCTTCAGCTGGTGGAAGAATGCCGAGTACTGGCTGGACCCGGCCGGAACG-CTCC-TGC 24566 || ||| ||| || | ||| ||| | |||| ||| | || || ||| ||| Sbjct 29455 TTTTTCCCGTGGCACCAGGAGCCCGCCTACCAGTTGGAGCCGACTGG--CGTCTCGGTGC 29512 Query 24567 CGCAGCGCCTGACAGATTATTTCGCCGAGCTTGAGGCAAAGCACGGCATCAAGACTAACG 24626 || || |||| | || ||||||||||| ||||| |||||| ||||| || || | Sbjct 29513 CGGCGCACCTGTTGAAGTACTTCGCCGAGCTGGAGGCCAAGCACTGCATCCGCACCAATG 29572 Query 24627 AAGGTCAGCGCGCCTGGTACGCCGCCAAGGAAAAGACCCTCGGCGACGACATGAAGCGGG 24686 || |||| || |||||||| |||| ||| |||| ||||| || ||||| | Sbjct 29573 CAGCGCAGCAGGCGTGGTACGCGAAGAAGGCCGAGATCCTCAAGGACGATATCAAGCGCG 29632 Query 24687 AATACCCGTCGATCCCTGCCGAGGCATTCCAGCAGAGCATCGAGGGCGCCTACTACGCCA 24746 ||||||| |||| || ||||| ||| |||||||||| ||||||||||||||||||| Sbjct 29633 AATACCCTTCGACGCCCCAGGAGGCCTTCGAGCAGAGCATTGAGGGCGCCTACTACGCCA 29692 Query 24747 AGCAATTCGCCAAGCTGTACGCACAGCAG-CGAAT----CG-GCGTGCTGCCAGATAACA 24800 |||| | |||| ||| | | | || || || |||| |||| ||||| Sbjct 29693 AGCAGATGCTGTGGCTG-CGGCAGAACCGTCGGATTACCCGCACGTG-TGCC-TATAACC 29749 Query 24801 GTCACCAGCCGGTGCACACCTTCTGGGACATCGGCGTGGGCGACTCAACGGCGATCTGGT 24860 | | |||||| |||| ||||||| | || || | ||| | | | ||||| || Sbjct 29750 CTTCGCTGCCGGTCTACACGGCCTGGGACCTGGGTATGAGTGACGCGATGACGATCGTGT 29809 Query 24861 TCGTTCGGATCGTTGGCGATGAGTTCCACGTCGTCGACTACTACGAGAACAGCGGCGAAG 24920 |||| | | | | || ||| | |||||| |||||||| |||| |||| ||||| | Sbjct 29810 TCGTGCAGGTTGCAGGTCGCGAGGTGCACGTCATCGACTACCTCGAGGACAGTGGCGAGG 29869 Query 24921 G 24921 | Sbjct 29870 G 29870 >seq30225 Length=16661 Score = 140 bits (154), Expect = 1e-28 Identities = 148/195 (76%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 35007 GTCAAAGCTGGCTTCCAGGCGCGCAACAAGCTCCGCGTTCACTGAGCGGCGATTGGCGTC 35066 ||| ||||||||||| ||||| || || ||||| || || ||||| | | |||| ||||| Sbjct 2254 GTCGAAGCTGGCTTCTAGGCGTGCGACCAGCTCAGCATTAACTGATCTGTGATTCGCGTC 2313 Query 35067 GGCGGCTTCCTTTAGGCTCTCGTAGAGCGAGTAAGGCAGCCGAAATTGGGATCGATAAAT 35126 || | | || || |||||| || | ||| || || | ||||| || || || || Sbjct 2314 AGCAGACGCTTTCAGCGCCTCGTACAGGGGGTACGGAAGTCTGAATTGAGAGCGGTATAT 2373 Query 35127 ATCTTCCATGTCACTAGCTTGACACTACGGCAATAGGTTCGTATAGTGACACCGCGTCAC 35186 || |||||||||||||||||||||||||| | ||||||||||||||||| ||||| Sbjct 2374 TTCATCCATGTCACTAGCTTGACACTACGGTTAGTGGTTCGTATAGTGACACGAAGTCAC 2433 Query 35187 TAAGAAGGGATGTCA 35201 ||| | ||| | ||| Sbjct 2434 TAATAGGGGGTTTCA 2448 >seq32920 Length=14210 Score = 102 bits (112), Expect = 3e-17 Identities = 128/176 (73%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 40120 GCCTTCGCTTCGACTGCTGCAATTCCGATTGTCGGTCCTTTTCTGGCTCCGGCTGCTGCG 40179 || || || ||||| ||||| || ||| |||| |||||| ||||||||| | |||||| Sbjct 12035 GCGTTTGCCTCGACGGCTGCCATCCCGGTTGTTGGTCCTGGTCTGGCTCCCGGTGCTGCT 11976 Query 40180 GCAACAGCCATCGCAGCAACTACTCCGATGGTTGGTGCTGTTGCCTCTCTGTCTCTAGCA 40239 || ||||| ||| || || | || ||||||| || ||| |||| | | | || Sbjct 11975 GCGGCAGCCGCCGCCGCTACCGCGCCAATGGTTGCTGGGGTTTCCTCAGCGGCCTTCGCG 11916 Query 40240 GGTATGGCGCACGACGGTATCGACAGCGTGCCTCGTGAGGGTACTTGGTTGCTTGA 40295 || || ||||||| ||||||||||| | | || ||| |||| ||| ||||||| Sbjct 11915 GGCATCGCGCACGGCGGTATCGACAACATCCCGAAGGAGAGTACCTGGCTGCTTGA 11860 >seq81150 Length=4228 Score = 96.9 bits (106), Expect = 1e-15 Identities = 150/211 (71%), Gaps = 15/211 (7%) Strand=Plus/Plus Query 42 TACCAATTTCGTACCGATTAGGCGTTTTCAGCTTGTCCAGTTCGGCCCAATCGGCGCTTG 101 ||||||||| |||||||| | ||||| ||||| ||| |||| |||| | Sbjct 158 TACCAATTTGATACCGATTTCG-------AGCTTATCCAGCTCGTCCCAGTCGGATGAGG 210 Query 102 AGTTGATCCATTTCGCGTA-GTGCTTGAGCAGCGTCTGGATGCTGTTGCCGAGCTGCTGC 160 |||||||||| |||||| ||| |||||||| |||| | | || |||||||||||| Sbjct 211 AGTTGATCCAGCGCGCGTATGTG-GTGAGCAGCATCTGCACGGAGTGGCCGAGCTGCTGG 269 Query 161 GCGATGAAGGCCGGAGCCATCCCGGCAGA---CAGGCAGACGGTCGCATAGGTGTGCCGG 217 || || ||||| || | | | |||| |||||||| |||||||||||||||||| Sbjct 270 GCAATAAAGGCGGG---CTTGAGGCCAGACATCAGGCAGATTGTCGCATAGGTGTGCCGG 326 Query 218 GTATCGTACTGCCGGCGCGGACGAATGCCCA 248 | |||| || | || || ||||||| Sbjct 327 CAGTTGTACGGCGGACGGTATCGGATGCCCA 357 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 155276548384096