Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_029120.1 Length=60875 Score E Sequences producing significant alignments: (Bits) Value seq11269 176 2e-39 >seq11269 Length=54388 Score = 176 bits (194), Expect = 2e-39 Identities = 294/429 (69%), Gaps = 36/429 (8%) Strand=Plus/Plus Query 2699 TTCGACAATGCGTTCGGCTTCATCCTTGTCATAGATACCAGCAAATCCGAAGGCCAGACG 2758 ||| || || || ||||| || |||| ||| || || || || || ||||| || || || Sbjct 43124 TTCAACGATCCGCTCGGCCTCGTCCTGGTCGTATATGCCGGCGAACCCGAACGCGAGGCG 43183 Query 2759 GGCACACTGAATCATCGCTTTATGCCGTAACATCCGTTTGGGATGCGACTGCCACGGCCC 2818 || ||||||||||| || || || || ||||| || || || ||||||||||| ||| Sbjct 43184 TGCGCACTGAATCATTGCCTTGTGGCGCAACATGCGCTTCGGGTGCGACTGCCATGGCT- 43242 Query 2819 CGTGATTTCTCTGCCTTCGCGGGTTTTGAATGGTGCGCGGCGACATTCATCCATCCACTC 2878 |||| ||| || ||| || ||| |||| Sbjct 43243 --------------------GGGTGTTG---------CGCTTACACTCCGACATGTACTC 43273 Query 2879 GGTAACGCAGATCGGGTGATTACGGTCTTTGCGGTAAATCCGACA--TGTACAGGATTCA 2936 ||| | | | ||||||| ||||||||||| || | || || || ||||| | ||| Sbjct 43274 GGTGATGGTGGTCGGGTGCTTACGGTCTTTCCGATGGATTCGGCAGGTGTACTCGCTTCC 43333 Query 2937 -TCGTCCTGC---TCAAAGTCCATGCCATCAAACTGCTGGTTTTCGTTGATAATGCGGGA 2992 || || || || || ||||||||||| |||||| ||| ||||||||| || || || Sbjct 43334 GTCAGCCGGCATCTCGAAATCCATGCCATCGAACTGCGGGTGTTCGTTGATGATCCGCGA 43393 Query 2993 CCAGCCATCAACGCCCACCACCGGAACGATGCCGTTCTGCTTATCAGGGAAGGCGTAAAT 3052 |||||| || | ||| || ||||| || |||||||| | ||| || ||||||||||| | Sbjct 43394 CCAGCCGTCCAGGCCAACTACCGGCACAATGCCGTTGTTCTTGTCGGGGAAGGCGTACAA 43453 Query 3053 TTCTTTCGTCCATGGATTAAGGCCGTACTGGTTGGCAACGATCAGCAATGCGATGAACTG 3112 ||||| || | || || || |||||||| ||| |||||||||| || | | ||| Sbjct 43454 CTCTTTGGTGAAGGGGTTCAGCTTGTACTGGTCGGCTACGATCAGCAGGGCAACCATCTG 43513 Query 3113 CGCATCGCT 3121 ||| || || Sbjct 43514 CGCGTCACT 43522 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 194261729333784