Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq2234 174 4e-38 seq32926 123 6e-23 seq2937 89.7 1e-12 >seq2234 Length=154088 Score = 174 bits (192), Expect = 4e-38 Identities = 171/221 (77%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 210897 AGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTT 210956 || || || || || ||||| ||||| || ||||| ||||| || |||| ||||| ||| Sbjct 10727 AGCCTGAGAACTAGATGAAGTGTGGATTCCTTTTGAATGTTGTAGTCCGAGAGGGTTCTT 10668 Query 210957 CCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCC 211016 |||||||||| || || || || ||||| | |||||||| || ||||||| |||||| Sbjct 10667 CCATCTTCCAATTGTTTTCCAGCAAAGATCAATCGTTGTTGATCTGGAGGAATTCCTTCT 10608 Query 211017 TTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTG 211076 |||||||| ||||| || || ||||| ||||| ||| |||||||| |||||| Sbjct 10607 TTGTCCTGAATCTTGGCCTTTACATTTTCAATGGTATCACTAGGCTCAACCTCTAGAGTG 10548 Query 211077 ATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || ||||| || |||||||| || ||||| | ||||||||| Sbjct 10547 ATGGTCTTGCCGGTGAGAGTTTTCACAAAAATCTGCATTTT 10507 Score = 145 bits (160), Expect = 2e-29 Identities = 163/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 210897 AGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTT 210956 |||| || || |||||||||||||| ||||||||||| || ||||| | ||| || | Sbjct 10955 AGTCGGAGAACCAGGTGAAGAGTGGATTCTTTTTGGATATTGTAATCTGAAAGAGTACGG 10896 Query 210957 CCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCC 211016 |||||||| |||||||| || || ||||| || | || || || || || | || || Sbjct 10895 CCATCTTCAAGCTGCTTTCCAGCAAAGATCAGCCTCTGCTGATCTGGTGGGATACCCTCT 10836 Query 211017 TTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTG 211076 || || || ||||| ||||| |||||||| |||||| || || || |||||| Sbjct 10835 TTATCTTGAATCTTGGCCTTCACATTTTCGATTGTGTCACTAGGCTCCACTTCAAGAGTG 10776 Query 211077 ATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||| || |||||||| ||||| | |||||| Sbjct 10775 ATGGTTTTTCCAGTCAGAGTCTTCACAAAGATCTGCAT 10738 Score = 141 bits (156), Expect = 2e-28 Identities = 162/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 210897 AGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTT 210956 ||||||| || || || ||||| || |||||||| ||||||||||||| || || | Sbjct 12095 AGTCTTAAAACCAGATGCAGAGTAGATTCTTTTTGAATGTTATAATCCGACAGAGTACGG 12036 Query 210957 CCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCC 211016 |||||||| || ||||| || || || || | || || || || || |||| |||||| Sbjct 12035 CCATCTTCTAGTTGCTTACCAGCAAAAATTAAACGCTGCTGATCTGGGGGAATTCCTTCT 11976 Query 211017 TTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTG 211076 ||||||||||| ||| ||| || ||||| ||||| ||| ||| || || | || Sbjct 11975 TTGTCCTGGATTTTTGCTTTAACATTTTCAATGGTATCACTTGGTTCGACTTCTAATGTA 11916 Query 211077 ATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || || |||||||||||||| | ||||| Sbjct 11915 ATTGTTTTACCTGTTAGAGTCTTTACAAAAATTTGCAT 11878 Score = 140 bits (154), Expect = 8e-28 Identities = 148/195 (76%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 ||||||||| | || | ||| ||||| ||||| || || || ||||| || | ||||| Sbjct 13459 ACGAAGTCTCAAAACCAAGTGTAGAGTAGACTCCTTCTGAATATTATAGTCAGACAGGGT 13400 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 ||||||||||||| ||| || || || ||||| || |||||||| || || || | ||| Sbjct 13399 TCTTCCATCTTCCAACTGTTTACCAGCAAAGATGAGACGTTGTTGATCTGGTGGTATTCC 13340 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||||||| ||||||||| ||| |||||||| || || ||| | || || || || Sbjct 13339 TTCCTTGTCTTGGATCTTTGCTTTAACGTTTTCAATAGTATCACTGGGCTCGACTTCTAG 13280 Query 211073 AGTGATCGTCTTTCC 211087 || || || ||||| Sbjct 13279 TGTAATTGTTTTTCC 13265 Score = 138 bits (152), Expect = 3e-27 Identities = 165/223 (74%), Gaps = 6/223 (3%) Strand=Plus/Minus Query 210896 AAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCT 210955 ||||| || || | |||||||||||| ||||| ||||| || ||||| | || || | Sbjct 11184 AAGTCGCAGAACCAAGTGAAGAGTGGATTCTTTCTGGATATTGTAATCAGACAGAGTACG 11125 Query 210956 TCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTC 211015 |||||||| ||||| || || |||||||| | | || ||||| ||||| | ||||| Sbjct 11124 ACCATCTTCAAGCTGTTTTCCGGCGAAGATCAATCTCTGCTGGTCTGGAGGGATGCCTTC 11065 Query 211016 CTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCT---TTCAACCTCGAG 211072 || |||||||| ||| ||| || ||||| || ||||| ||| |||||| || | Sbjct 11064 TTTATCCTGGATTTTTGTTTTGACATTTTCTATTGTGTC---GCTAGGTTCAACTTCTAA 11008 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 || || ||||| || || ||||||||||| || | |||||| Sbjct 11007 CGTTATGGTCTTCCCTGTCAGAGTCTTTACGAATATTTGCATT 10965 Score = 138 bits (152), Expect = 3e-27 Identities = 164/221 (74%), Gaps = 6/221 (3%) Strand=Plus/Minus Query 210897 AGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTT 210956 ||||| | ||| | |||||| || || || ||||||||||| || |||| || || | | Sbjct 11867 AGTCTCAAGACCAAGTGAAGGGTTGATTCCTTTTGGATGTTGTAGTCCGACAGAGTACGT 11808 Query 210957 CCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCC 211016 |||||||| ||||||||||| || ||||| | |||||||| |||||||| | |||||| Sbjct 11807 CCATCTTCTAGCTGCTTGCCCGCAAAGATTAATCGTTGTTGATCAGGAGGGATACCTTCC 11748 Query 211017 TTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTT---TCAACCTCGAGA 211073 || || || || || ||| || ||||| || || ||| ||| ||||| || || Sbjct 11747 TTATCTTGAATTTTAGCTTTGACATTTTCAATTGTATCA---CTTGGCTCAACTTCTAGT 11691 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||| || || ||||| || || || | ||||| Sbjct 11690 GTAATTGTCTTCCCAGTAAGAGTTTTGACGAAGATTTGCAT 11650 Score = 125 bits (138), Expect = 2e-23 Identities = 160/219 (73%), Gaps = 6/219 (3%) Strand=Plus/Minus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 ||| || || || || || || ||||||||||||||||| ||||||| ||||| | || Sbjct 12321 TCTGAGAACTAGATGGAGTGTAGACTCTTTTTGGATGTTGTAATCCGACAGGGTACGCCC 12262 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 |||||| ||||| || || || || || || | ||| || || || |||| ||||| || Sbjct 12261 ATCTTCAAGCTGTTTACCAGCAAAAATCAGCCTTTGCTGATCTGGTGGAATGCCTTCTTT 12202 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCT---TTCAACCTCGAGAGT 211075 || || || ||| ||| || ||||| || || || ||| ||| || || | || Sbjct 12201 ATCTTGAATTTTTGTTTTGACATTTTCAATTGTATC---GCTTGGTTCTACTTCTAAGGT 12145 Query 211076 GATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||| |||||||| ||||| || || ||||| | ||||| Sbjct 12144 GATGGTCTTTCCAGTGAGGGTTTTAACAAAAATTTGCAT 12106 Score = 107 bits (118), Expect = 4e-18 Identities = 140/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 || || || | ||| || || ||||| || ||||| || |||||||| |||| ||||| Sbjct 12638 CGGAGCCTCAAGACTAGATGCAGAGTTGATTCTTTCTGAATGTTATAGTCCGATAGGGTT 12579 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | |||||||| || || || ||||||||||| | | || || || ||||||| ||| Sbjct 12578 CGGCCATCTTCAAGTTGTTTACCTGCGAAGATTAACCTCTGCTGATCTGGAGGAATACCT 12519 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 || || || || || || |||||| || || ||||| ||| |||||| || ||| Sbjct 12518 TCTTTATCTTGAATTTTAGCTTTCACATTCTCAATGGTATCACTTGGTTCAACTTCAAGA 12459 Query 211074 GTGATCGTCTTTCC 211087 || || || || || Sbjct 12458 GTAATGGTTTTACC 12445 Score = 98.7 bits (108), Expect = 2e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 210918 GTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCT 210977 || || |||||||||||||| ||||| | ||| || | |||||||||| |||||| || Sbjct 11618 GTAGATTCTTTTTGGATGTTGTAATCAGAAAGAGTACGACCATCTTCCAACTGCTTACCA 11559 Query 210978 GCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTC 211037 || || || || | ||||| || || || | ||||| ||||| || || || ||| Sbjct 11558 GCAAAAATTAGCCTCTGTTGATCTGGGGGGATACCTTCTTTGTCTTGAATTTTGGCTTTG 11499 Query 211038 ACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTC 211097 |||||||| || |||||| || || || | ||||| || || || || || || Sbjct 11498 ACGTTTTCTATTGTGTCACTAGGCTCTACTTCCAAGGTGATGGTTTTGCCAGTTAGGGTT 11439 Query 211098 TTTACAAACACCTGCAT 211114 || || || | ||||| Sbjct 11438 TTCACGAAAATTTGCAT 11422 >seq32926 Length=14205 Score = 123 bits (136), Expect = 6e-23 Identities = 160/222 (72%), Gaps = 7/222 (3%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 ||||||||| | || | ||| | ||| ||||| || || || ||||| || | ||||| Sbjct 13899 ACGAAGTCTCAAAACCAAGTGTACAGTAGACTCCTTCTGAATATTATAGTCAGACAGGGT 13958 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 ||||||||||||| | | || || || || |||||||| || || || | ||| Sbjct 13959 TCTTCCATCTTCCAAC-------CAGCAAAAATGAGACGTTGTTGATCTGGTGGTATTCC 14011 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||||||| ||||||||| ||| |||||||| || | ||| | || || || || Sbjct 14012 TTCCTTGTCTTGGATCTTTGCTTTAACGTTTTCAATAGCATCACTGGGCTCGACTTCTAG 14071 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || ||||| || ||||| || || || | |||||| Sbjct 14072 TGTAATTGTTTTTCCTGTTAGAGTTTTGACGAATATCTGCAT 14113 >seq2937 Length=135122 Score = 89.7 bits (98), Expect = 1e-12 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 211011 CCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCG 211070 ||||||||||| || || || |||||| ||||| ||||| |||||| ||| |||||| Sbjct 14791 CCTTCCTTGTCTTGAATTTTGGCTTTCACATTTTCAATGGTATCAGAGGCTTCGACCTCG 14732 Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 ||||| || || || || || | |||||| || || | ||||||||| Sbjct 14731 AGAGTAATGGTTTTCCCAGTCAAAGTCTTCACGAAAATCTGCATTTT 14685 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1156475200714140