Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq2234 98.7 9e-16 >seq2234 Length=154088 Score = 98.7 bits (108), Expect = 9e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 ||||||||||| | | || | ||| || || ||||||||| || || ||||| | Sbjct 12332 CCTCCTCTTAATCTGAGAACTAGATGGAGTGTAGACTCTTTTTGGATGTTGTAATCCGAC 12273 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || || || | || ||||||||||| || ||||| || || | ||||| || | || Sbjct 12272 AGGGTACGCCCATCTTCAAGCTGTTTACCAGCAAAAATCAGCCTTTGCTGATCTGGTGGA 12213 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTT-GAGCGTCGCCACCGTATCGCTCGACTCCAC 39236 | || ||||| || ||| ||| ||||| || | | | |||||||| | || || Sbjct 12212 ATGCCTTCTTTATCT-TGAATTTTTGTTTTGACATTTTCAATTGTATCGCTTGGTTCTAC 12154 Query 39237 GTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || | ||||| | ||||| || || ||||||||||| |||||||| Sbjct 12153 TTCTAAGGTGATGGTCTTTCCAGTGAGGGTTTTAACAAAAATTTGCAT 12106 Score = 98.7 bits (108), Expect = 9e-16 Identities = 165/239 (69%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 39046 AATTTATTCAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATA 39105 ||| | | || ||||||||| || | | ||||| ||||| || || || || ||| Sbjct 12884 AATATCTGCATGCCTCCTCTCAACCTGAGAACCAAGTGTAGAGTAGATTCCTTCTGGATA 12825 Query 39106 TTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGC 39165 |||||||| | | |||| | || ||||| ||||| || ||||| || | | |||| Sbjct 12824 TTATAATCTGACAAAGTTCTGCCATCTTCAAGTTGTTTACCAGCAAAGATTAACCTCTGC 12765 Query 39166 TGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCG 39225 || || | ||| | | ||||| ||| |||||| ||| | || | | ||||| Sbjct 12764 TGATCTGGGGGAATACCTTCTTTATCCTGGATTTTGGCTTTCACATTCTCAATTGTATCA 12705 Query 39226 CTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || | || || || | ||||| |||| || ||||| ||||||||||| |||||||| Sbjct 12704 CTAGGTTCAACTTCTAAGGTGATGGTTTTGCCAGTCAGGGTTTTAACAAAAATTTGCAT 12646 Score = 86.0 bits (94), Expect = 5e-12 Identities = 163/240 (68%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 39045 AAATTTATTCAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTAT 39104 |||| | | || |||||||| | || | ||||| || || ||| ||||| || || Sbjct 11205 AAATATTTGCATACCTCCTCTAAGTCGCAGAACCAAGTGAAGAGTGGATTCTTTCTGGAT 11146 Query 39105 ATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTG 39164 ||| ||||| | || || || | || ||||||||||| || || || || | | ||| Sbjct 11145 ATTGTAATCAGACAGAGTACGACCATCTTCAAGCTGTTTTCCGGCGAAGATCAATCTCTG 11086 Query 39165 CTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATC 39224 |||||| | || | || ||||| ||| |||||| ||||| | | | || || Sbjct 11085 CTGGTCTGGAGGGATGCCTTCTTTATCCTGGATTTTTGTTTTGACATTTTCTATTGTGTC 11026 Query 39225 GCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 ||| | || || || | ||| || | || || ||||| || || || || |||||||| Sbjct 11025 GCTAGGTTCAACTTCTAACGTTATGGTCTTCCCTGTCAGAGTCTTTACGAATATTTGCAT 10966 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428602048859468