Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq2234 161 7e-35 seq32926 89.7 3e-13 >seq2234 Length=154088 Score = 161 bits (178), Expect = 7e-35 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| |||||||| |||||||| || || ||||| ||||| | ||||| || | | Sbjct 11422 ATGCAAATTTTCGTGAAAACCCTAACTGGCAAAACCATCACCTTGGAAGTAGAGCCTAGT 11481 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | |||| | ||| |||||| |||||||||||| | || ||||||||| Sbjct 11482 GACACAATAGAAAACGTCAAAGCCAAAATTCAAGACAAAGAAGGTATCCCCCCAGATCAA 11541 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | |||| ||||| || || || ||||||| | || ||| | ||||||||| Sbjct 11542 CAGAGGCTAATTTTTGCTGGTAAGCAGTTGGAAGATGGTCGTACTCTTTCTGATTACAAC 11601 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || |||||||| || ||||||||||||||| | |||||| ||||||| Sbjct 11602 ATCCAAAAAGAATCTACATTACATTTAGTTCTGAGGTTGAGAGGAGG 11648 Score = 136 bits (150), Expect = 3e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 |||||||||||||| || ||||| ||||| || || || |||||||| || ||||| | Sbjct 10507 AAAATGCAGATTTTTGTGAAAACTCTCACCGGCAAGACCATCACTCTAGAGGTTGAGCCT 10566 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | || || |||||| |||| || ||| ||||||||||| | || |||||| Sbjct 10567 AGTGATACCATTGAAAATGTAAAGGCCAAGATTCAGGACAAAGAAGGAATTCCTCCAGAT 10626 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 ||||| || || || ||||| || |||||| ||||||| | | | || | || ||| Sbjct 10627 CAACAACGATTGATCTTTGCTGGAAAACAATTGGAAGATGGAAGAACCCTCTCGGACTAC 10686 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||||| ||||| || |||||| | ||| ||||| | ||| | |||| || Sbjct 10687 AACATTCAAAAGGAATCCACACTTCATCTAGTTCTCAGGCTCAGAGGTGG 10736 Score = 134 bits (148), Expect = 9e-27 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| ||||| |||||||||||||| ||||| || ||||| | ||||| || | | Sbjct 12106 ATGCAAATTTTTGTTAAAACCCTCACTGGAAAGACCATCACCTTAGAAGTAGAACCAAGC 12165 Query 23671 GACACTGTTG-AAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || ||| |||| | ||||| ||||||| || |||||||| | || |||||||| Sbjct 12166 GATACAATTGAAAATGTCAAAAC-AAAAATTCAAGATAAAGAAGGCATTCCACCAGATCA 12224 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 || | | || ||||| || ||||| || ||||| | || || | |||||||| Sbjct 12225 GCAAAGGCTGATTTTTGCTGGTAAACAGCTTGAAGATGGGCGTACCCTGTCGGATTACAA 12284 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||| ||||||||||| ||| | ||| ||||| | || || ||||||| Sbjct 12285 CATCCAAAAAGAGTCTACACTCCATCTAGTTCTCAGATTAAGAGGAGG 12332 Score = 129 bits (142), Expect = 4e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| ||||| ||||||||||| || || ||||| ||||| | |||||||| | | Sbjct 12646 ATGCAAATTTTTGTTAAAACCCTGACTGGCAAAACCATCACCTTAGAAGTTGAACCTAGT 12705 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||| ||| | ||| | ||||| || ||||||||| | || |||||||| Sbjct 12706 GATACAATTGAGAATGTGAAAGC-CAAAATCCAGGATAAAGAAGGTATTCCCCCAGATCA 12764 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | ||||| ||||| || |||||||| ||||| | | ||||| ||||| || Sbjct 12765 GCAGAGGTTAATCTTTGCTGGTAAACAACTTGAAGATGGCAGAACTTTGTCAGATTATAA 12824 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || || || || || || |||| || ||| | |||||| ||||||| Sbjct 12825 TATCCAGAAGGAATCTACTCTACACTTGGTTCTCAGGTTGAGAGGAGG 12872 Score = 125 bits (138), Expect = 5e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| ||||| || || || || || || ||||| || || | ||||| || | | Sbjct 11878 ATGCAAATTTTTGTAAAGACTCTAACAGGTAAAACAATTACATTAGAAGTCGAACCAAGT 11937 Query 23671 GACACTGTTGAAA-TATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||||| | ||||| |||||| | ||||||||||| | || |||||||| Sbjct 11938 GATACCATTGAAAATGTTAAAGCAAAAA-TCCAGGACAAAGAAGGAATTCCCCCAGATCA 11996 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||||||||| ||||| || || ||||| ||||| | || ||| | ||||| || Sbjct 11997 GCAGCGTTTAATTTTTGCTGGTAAGCAACTAGAAGATGGCCGTACTCTGTCGGATTATAA 12056 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||| |||||||| || || | ||| | |||||||| | ||||||| Sbjct 12057 CATTCAAAAAGAATCTACTCTGCATCTGGTTTTAAGACTCAGAGGAGG 12104 Score = 107 bits (118), Expect = 1e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || ||||| | || || || || || || | ||| ||| | | Sbjct 11194 ATGCAAATATTTGTCAAAACTTTGACAGGGAAGACCATAACCTTAGAAAGTGAACCTAGC 11253 Query 23671 GACACTGTTGAAA-TATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | |||| | | || ||||||| | || ||||||||| | || ||||| || Sbjct 11254 GACACAATAGAAAATGTCAAGACAAAAA-TCCAAGATAAAGAAGGTATTCCCCCAGACCA 11312 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||||||| || ||||| || || ||||| ||||| | || ||| || || ||||| Sbjct 11313 ACAGCGTTTGATTTTTGCTGGTAAGCAACTAGAAGATGGCCGTACTCTATCGGACTACAA 11372 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||| || ||||| || || ||||| |||| || ||| | ||||||| Sbjct 11373 CATTCAGAAAGAATCTACTCTACATCTAGTCTTGAGGCTTAGAGGAGG 11420 Score = 87.8 bits (96), Expect = 1e-12 Identities = 140/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 23638 GGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTTGAAATATTAAAACAAAAA 23697 |||||||| || || || ||||| || ||| || ||| |||||| | ||| ||| Sbjct 13265 GGAAAAACAATTACACTAGAAGTCGAGCCCAGTGATACTATTGAAAACGTTAAAGCAAAG 13324 Query 23698 ATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAA 23757 || ||||| ||||| |||| ||||||||||| ||| | || ||||| || ||||| Sbjct 13325 ATCCAAGACAAGGAAGGAATACCACCAGATCAACAACGTCTCATCTTTGCTGGTAAACAG 13384 Query 23758 CTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCACATTACATTTA 23817 ||||||| | | | || | || || || || || || ||||| || |||| || Sbjct 13385 TTGGAAGATGGAAGAACCCTGTCTGACTATAATATTCAGAAGGAGTCTACTCTACACTTG 13444 Query 23818 GTTTTAAGGTTGCGAGGAGGA 23838 ||||| || | || || ||| Sbjct 13445 GTTTTGAGACTTCGTGGTGGA 13465 >seq32926 Length=14205 Score = 89.7 bits (98), Expect = 3e-13 Identities = 156/228 (68%), Gaps = 7/228 (3%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| ||||| || || |||||||| || || || ||||| || ||| Sbjct 14113 ATGCAGATATTCGTCAAAACTCTAACAGGAAAAACAATTACACTAGAAGTCGAGCCCAGT 14054 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || |||||| | ||| ||| || ||||| ||||| |||| ||||||||| Sbjct 14053 GATGCTATTGAAAACGTTAAAGCAAAGATCCAAGACAAGGAAGGAATACCACCAGATCAA 13994 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || ||| | || ||||| || ||||||| | | | || | || || || Sbjct 13993 CAACGTCTCATTTTTGCTGG-------TTGGAAGATGGAAGAACCCTGTCTGACTATAAT 13941 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 || || || ||||| || |||| || ||||| || | || || ||| Sbjct 13940 ATTCAGAAGGAGTCTACTGTACACTTGGTTTTGAGACTTCGTGGTGGA 13893 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337267119239888