Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_030936.1 Length=93843 Score E Sequences producing significant alignments: (Bits) Value seq12585 86.0 4e-12 >seq12585 Length=48618 Score = 86.0 bits (94), Expect = 4e-12 Identities = 164/236 (69%), Gaps = 12/236 (5%) Strand=Plus/Minus Query 48497 ATCCCCGGATCCATGGGCACCAAGTCCTATGTCGTCCGCGGCAAAGGGAATGAGTCCGGC 48556 |||||||| |||||||| ||||| || |||| |||||| ||||| ||| | Sbjct 43486 ATCCCCGGCTCCATGGGGGCCAAGAGCTTCATCGTACGCGGCCTGGGGAACGAGGAAGCG 43427 Query 48557 CTCTTCTC-TGCGCCCCATGGTGCCGGTCGTCAGTATTCGC-GCACCCAGGCCAAGAAGC 48614 ||| ||| ||| || | || ||||| || | || || | ||| |||| ||||||| Sbjct 43426 TTCTGCTCCTGCAGCC-ACGGCGCCGGCCGA-ACCATGAGCCGTACCAAGGCGAAGAAGC 43369 Query 48615 TGTTCACCCTGGATGACCTCGCCGACCGAATGAAGGGCA----TCGAATACCGCCACGGC 48670 |||| ||| |||| |||| || | | | ||| |||||| ||| | | | Sbjct 43368 TGTTTACCGTGGACGACCA----GATCAAGGCCACGGCCCACGTCGAATGCCGAAAGGAC 43313 Query 48671 GAAGAGTGGATCGACGAGATCCCGGACGCCTACAAGGACATCGACCAGGTGATGGA 48726 | || ||||||||| |||||| ||||||||||||||||||||||| ||||| Sbjct 43312 GCCGACGTGATCGACGAAATCCCGATGGCCTACAAGGACATCGACCAGGTAATGGA 43257 Score = 84.2 bits (92), Expect = 1e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 47664 TGCCGTTCATCCATCCTCACGTCGCCCTCATGCCGGATGCACACGGCGGCAAAGGATCTG 47723 ||||||||||| ||| | || | |||||||| | ||| || || || || Sbjct 44301 TGCCGTTCATCTTCAAGCACCTGGCGGTGATGCCGGACGTGCACCTGGGTAAGGGCTCGA 44242 Query 47724 CCGTCGGCACGGTGATTCCCACGGTGGACGCCGTGATCCCGGCCGCGGTCGGCGTGGACA 47783 || |||||| ||||| |||||||| | ||| | |||||||| || || || ||||| | Sbjct 44241 CCATCGGCAGCGTGATCCCCACGGTCGGCGCGATTATCCCGGCGGCCGTTGGTGTGGATA 44182 Query 47784 TCGGCTGCGGCATGATCGGCG 47804 |||| ||||||||||||| || Sbjct 44181 TCGGTTGCGGCATGATCGCCG 44161 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 299513432547984