Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_030943.1 Length=54990 Score E Sequences producing significant alignments: (Bits) Value seq1 104 8e-18 seq140 84.2 8e-12 seq68 84.2 8e-12 >seq1 Length=1655743 Score = 104 bits (114), Expect = 8e-18 Identities = 252/376 (67%), Gaps = 12/376 (3%) Strand=Plus/Minus Query 3603 TGCGGATCAACTCTCCCGGCGGCGACGTCTACGACGCGATCGCCATCACCAACGCGCTGC 3662 ||||| | ||| ||||||||| |||| ||||||| |||| ||| ||| ||| | Sbjct 161229 TGCGGCTGAACAGCCCCGGCGGCTCGGTCTTCGACGCGGTCGCGATCCACAATGCGAT-- 161172 Query 3663 GCAA---CCACGACGCGACGATCACCGTCCAGGTCGACGGCCTCGCCGCGTCGGCGGCGA 3719 ||| |||||| | ||| |||| ||| | ||||||| ||||||| ||||| || Sbjct 161171 -CAAGCGCCACGAGGGCACGGTCACGGTCTGGATCGACGGTATCGCCGCCTCGGCCGCCT 161113 Query 3720 GCTTCATCGCGATGGCCGGCGACGAGGTGGTGATGTGCCGCAACACCGAGATGATGATCC 3779 || |||||||||||| ||||||||| | || ||| | ||| || ||||||||| Sbjct 161112 CCTACATCGCGATGGCGGGCGACGAGATCGTCATGCCCGAGAACGCCTTCCTGATGATCC 161053 Query 3780 ACGACGCCCGCGGATTCTGCATCGGCAACGCCACCGACATGGCCGAGTACGCCGAGTGGC 3839 ||||| | ||| || || |||| ||| |||||| || |||||| || Sbjct 161052 ACGACCCGTCCGGCCTCGTGATGGGCACGGCCGAGGACATGCGCGCCATGGCCGAGGCGC 160993 Query 3840 TCGGCCGCGCGAGCGACAACATCGCCTCGATGTACGCCGAGAAGACCGGC--GGCG-AGG 3896 ||| | | || | || | ||| ||| || |||| ||| ||||| | || || Sbjct 160992 TCGACAAGGTGAAGGGCAGCCTCGTCTCCGGCTATGCCGCGAAATCCGGCCGGACGCCGG 160933 Query 3897 TGAAGGACTGGCGCAAGGCGATGACGGCCGAGACCTGGTACACGGCTGAGGAAGCCGTCG 3956 | ||| || ||| | ||| | ||||||||||||| | || ||| ||||||| Sbjct 160932 AGGAGGTCT-CCGC--GCTCATGGCCGCCGAGACCTGGTTCGACGCATCGGACGCCGTCG 160876 Query 3957 AGGCGGGGCTCGCCGA 3972 | ||| ||||||| Sbjct 160875 CGCAGGGCTTCGCCGA 160860 Score = 84.2 bits (92), Expect = 8e-12 Identities = 112/155 (72%), Gaps = 3/155 (2%) Strand=Plus/Minus Query 53720 CAGATCGGATCGACTCCGTGTTCATCGCGGTGAGCCGCGACGAACTCCACGATCAGCGCT 53779 |||||||| ||||| ||||| ||| || || || ||| ||| |||| |||| | Sbjct 581971 CAGATCGGCTCGACCCCGTGCGCATTCCGATGCGCGTCGATGAATCCCACCATCACTTCG 581912 Query 53780 GTGGGCGGTCGATCTCCGCC---GCAAAGAAAGCCGAAGCCTGCTTCAAGATCGTGTTCG 53836 | ||||||||| ||||||| ||||| | || || |||| || |||| ||||| Sbjct 581911 ATCGGCGGTCGAGCTCCGCCATCGCAAAATACGCTGACGCCTTGCGCAGGATCTCGTTCG 581852 Query 53837 CTCGCCGCAGTTCACGGTTCTCCCGCTCCAACGCC 53871 | |||||||| |||||||||||||| | |||| Sbjct 581851 ACTGGCGCAGTTCGCGGTTCTCCCGCTCAAGCGCC 581817 >seq140 Length=372893 Score = 84.2 bits (92), Expect = 8e-12 Identities = 112/155 (72%), Gaps = 3/155 (2%) Strand=Plus/Plus Query 53720 CAGATCGGATCGACTCCGTGTTCATCGCGGTGAGCCGCGACGAACTCCACGATCAGCGCT 53779 |||||||| ||||| ||||| ||| || || || ||| ||| |||| |||| | Sbjct 158554 CAGATCGGCTCGACCCCGTGCGCATTCCGATGCGCGTCGATGAATCCCACCATCACTTCG 158613 Query 53780 GTGGGCGGTCGATCTCCGCC---GCAAAGAAAGCCGAAGCCTGCTTCAAGATCGTGTTCG 53836 | ||||||||| ||||||| ||||| | || || |||| || |||| ||||| Sbjct 158614 ATCGGCGGTCGAGCTCCGCCATCGCAAAATACGCTGACGCCTTGCGCAGGATCTCGTTCG 158673 Query 53837 CTCGCCGCAGTTCACGGTTCTCCCGCTCCAACGCC 53871 | |||||||| |||||||||||||| | |||| Sbjct 158674 ACTGGCGCAGTTCGCGGTTCTCCCGCTCAAGCGCC 158708 >seq68 Length=444459 Score = 84.2 bits (92), Expect = 8e-12 Identities = 112/155 (72%), Gaps = 3/155 (2%) Strand=Plus/Minus Query 53720 CAGATCGGATCGACTCCGTGTTCATCGCGGTGAGCCGCGACGAACTCCACGATCAGCGCT 53779 |||||||| ||||| ||||| ||| || || || ||| ||| |||| |||| | Sbjct 221955 CAGATCGGCTCGACCCCGTGCGCATTCCGATGCGCGTCGATGAATCCCACCATCACTTCG 221896 Query 53780 GTGGGCGGTCGATCTCCGCC---GCAAAGAAAGCCGAAGCCTGCTTCAAGATCGTGTTCG 53836 | ||||||||| ||||||| ||||| | || || |||| || |||| ||||| Sbjct 221895 ATCGGCGGTCGAGCTCCGCCATCGCAAAATACGCTGACGCCTTGCGCAGGATCTCGTTCG 221836 Query 53837 CTCGCCGCAGTTCACGGTTCTCCCGCTCCAACGCC 53871 | |||||||| |||||||||||||| | |||| Sbjct 221835 ACTGGCGCAGTTCGCGGTTCTCCCGCTCAAGCGCC 221801 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 175470035510464