Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_031007.1 Length=223935 Score E Sequences producing significant alignments: (Bits) Value seq26 138 2e-27 seq6372 122 1e-22 seq163424 107 3e-18 seq11470 89.7 7e-13 >seq26 Length=549101 Score = 138 bits (152), Expect = 2e-27 Identities = 193/268 (72%), Gaps = 2/268 (1%) Strand=Plus/Plus Query 99184 CGAAGGCGTGCCGAAGAAAGACCGTACGGGAACCGGTACCCTGTCTATTTTCGGGCACCA 99243 ||||||| | |||| ||||| || || ||||| ||| || | ||||| ||||| Sbjct 240133 CGAAGGCCAGTTCAAGAGCGACCGCACCGGCACCGGCACCTACTCGGTGTTCGGCCACCA 240192 Query 99244 GATGCGTTTCAATCTGCAAGAAGGCTTTCCGCTGGTAACGACTAAG-CGCTGTCACATGC 99302 |||||| ||| | ||| |||||||| ||| || | || || ||| |||| ||| || Sbjct 240193 GATGCGCTTCGACCTGGCCGAAGGCTTCCCGGTGCTGACCACCAAGAAGCTG-CACCTGA 240251 Query 99303 GTTCGATTATTCACGAACTGCTGTGGTTCCTGAAAGGCGATACCAATGTCAAATATTTAA 99362 ||||| || ||||||||||||||||||||| | ||||| ||||| || || | | Sbjct 240252 AGTCGATCATCCACGAACTGCTGTGGTTCCTGCAGGGCGACACCAACATCCGCTACCTGA 240311 Query 99363 ATGATAATGGTGTAACTATTTGGGACGAATGGAAGAACAAAGATGGCGACCTCGGACCGG 99422 | || | || || || |||||||| ||| || | | |||||||||||||||| Sbjct 240312 AGGAACACGGCGTGCGCATCTGGGACGAGTGGGCCGACGAGAACGGCGACCTCGGACCGG 240371 Query 99423 TATACGGTAAACAGTGGCGGTCTTGGCC 99450 | ||||| | |||||||| || ||||| Sbjct 240372 TCTACGGCTACCAGTGGCGCTCCTGGCC 240399 >seq6372 Length=86001 Score = 122 bits (134), Expect = 1e-22 Identities = 174/245 (71%), Gaps = 0/245 (0%) Strand=Plus/Minus Query 99197 AAGAAAGACCGTACGGGAACCGGTACCCTGTCTATTTTCGGGCACCAGATGCGTTTCAAT 99256 ||| |||||||||| || || || ||| | ||||| |||||||||||||| | Sbjct 39810 AAGGAAGACCGTACCGGCACGGGCACCTACAGCGTGTTCGGCTACCAGATGCGTTTCGAC 39751 Query 99257 CTGCAAGAAGGCTTTCCGCTGGTAACGACTAAGCGCTGTCACATGCGTTCGATTATTCAC 99316 ||| || || || || | || || || ||| || ||| |||| ||||| || ||| Sbjct 39750 CTGGCCGATGGTTTCCCCATCGTCACCACCAAGAAGTGCCACCTGCGCTCGATCATCCAC 39691 Query 99317 GAACTGCTGTGGTTCCTGAAAGGCGATACCAATGTCAAATATTTAAATGATAATGGTGTA 99376 || |||||||||||||| | ||||| ||||| |||| || | || || || || || Sbjct 39690 GAGCTGCTGTGGTTCCTCCAGGGCGACACCAACATCAAGTACCTCAAGGACAACGGCGTC 39631 Query 99377 ACTATTTGGGACGAATGGAAGAACAAAGATGGCGACCTCGGACCGGTATACGGTAAACAG 99436 | || |||||||| ||| || | | ||| ||||||| ||||| ||||| | ||| Sbjct 39630 AGCATCTGGGACGAGTGGGCCGACGAGAACGGCAACCTCGGCCCGGTCTACGGCTACCAG 39571 Query 99437 TGGCG 99441 ||||| Sbjct 39570 TGGCG 39566 >seq163424 Length=1083 Score = 107 bits (118), Expect = 3e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 99233 TTCGGGCACCAGATGCGTTTCAATCTGCAAGAAGGCTTTCCGCTGGTAACGACTAAGCGC 99292 || || || |||||||| || ||||| || |||||||||||||| || || ||| Sbjct 786 TTTGGCCATCAGATGCGCTTTGATCTGGCCGAGGGCTTTCCGCTGGTGACCACCAAGAAG 845 Query 99293 TGTCACATGCGTTCGATTATTCACGAACTGCTGTGGTTCCTGAAAGGCGATACCAATGTC 99352 ||||| | || || || ||||| ||||||||||| || | ||||||||||| || Sbjct 846 TGTCATCTCAAGTCCATCATCCACGAGCTGCTGTGGTTTTTGCAGGGCGATACCAACATC 905 Query 99353 AAATATTTAAATGATAATGGTGTAACTATTTGGGACGAATGGAAGAACAAAGATGGCGAC 99412 ||| | || || || || || | || |||||||| ||| || | |||||||| Sbjct 906 CGGTATCTGAAGGAAAACGGCGTCTCCATCTGGGACGAGTGGGCAGACGAGAATGGCGAC 965 Query 99413 CTCGGACCGGTATACGGTAAACAGTGGCG 99441 || || ||||| || || | |||||||| Sbjct 966 CTGGGGCCGGTCTATGGCTATCAGTGGCG 994 >seq11470 Length=53368 Score = 89.7 bits (98), Expect = 7e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 99203 GACCGTACGGGAACCGGTACCCTGTCTATTTTCGGGCACCAGATGCGTTTCAATCTGCAA 99262 |||||||| || || ||||| | || | || || || || |||||||| |||| Sbjct 34883 GACCGTACAGGTACAGGTACACGTTCGGTATTTGGTCATCAAATGCGTTTTGATCTTTCT 34824 Query 99263 GAAGGCTTTCCGCTGGTAACGACTAAGCGCTGTCACATGCGTTCGATTATTCACGAACTG 99322 |||| ||||| | |||| |||||| |||| | ||||| ||| | || || Sbjct 34823 AAAGGTTTTCCATTACTAACCACTAAGAAAGTTCACTTTCGTTCAATTGTAATTGAGCTT 34764 Query 99323 CTGTGGTTCCTGAAAGGCGATACCAATGTCAAATATTTAAATGATAATGGTGTAACTATT 99382 || |||||||| ||||| ||||| || || ||||| | || || ||| || |||||| Sbjct 34763 CTTTGGTTCCTCAAAGGTGATACTAACGTTCAATATCTCAAAGACAATAAAGTCACTATT 34704 Query 99383 TGGGACGAATGG 99394 ||||| |||||| Sbjct 34703 TGGGATGAATGG 34692 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 714849842431200