Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_031010.1 Length=246390 Score E Sequences producing significant alignments: (Bits) Value seq6372 172 9e-38 seq26 172 9e-38 seq163424 149 1e-30 seq21230 109 9e-19 seq33415 93.3 7e-14 >seq6372 Length=86001 Score = 172 bits (190), Expect = 9e-38 Identities = 158/200 (79%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 202543 AAGAAAGACCGTACCGGCACCGGCACGCGCTCCTTGTTCGGGGCCCAGATGCGGTTTGAC 202602 ||| |||||||||||||||| ||||| | | ||||||| ||||||||| || ||| Sbjct 39810 AAGGAAGACCGTACCGGCACGGGCACCTACAGCGTGTTCGGCTACCAGATGCGTTTCGAC 39751 Query 202603 CTGACCGAAGGCTTCCCACTGGTGACCACGAAAAAGGTTCACCTCCGTTCTATCATTCAC 202662 ||| |||| || ||||| | || ||||| || ||| ||||| || || ||||| ||| Sbjct 39750 CTGGCCGATGGTTTCCCCATCGTCACCACCAAGAAGTGCCACCTGCGCTCGATCATCCAC 39691 Query 202663 GAGCTGCTGTGGTTCCTGAAAGGGGACACCAACATCAGTTACCTGAACGATAACGGGGTC 202722 ||||||||||||||||| | || ||||||||||||| ||||| || || ||||| ||| Sbjct 39690 GAGCTGCTGTGGTTCCTCCAGGGCGACACCAACATCAAGTACCTCAAGGACAACGGCGTC 39631 Query 202723 ACTATCTGGGACGAATGGGC 202742 | ||||||||||| ||||| Sbjct 39630 AGCATCTGGGACGAGTGGGC 39611 >seq26 Length=549101 Score = 172 bits (190), Expect = 9e-38 Identities = 158/200 (79%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 202543 AAGAAAGACCGTACCGGCACCGGCACGCGCTCCTTGTTCGGGGCCCAGATGCGGTTTGAC 202602 |||| ||||| |||||||||||||| ||| ||||||| ||||||||| || ||| Sbjct 240146 AAGAGCGACCGCACCGGCACCGGCACCTACTCGGTGTTCGGCCACCAGATGCGCTTCGAC 240205 Query 202603 CTGACCGAAGGCTTCCCACTGGTGACCACGAAAAAGGTTCACCTCCGTTCTATCATTCAC 202662 ||| ||||||||||||| || ||||||| || ||| | ||||| || ||||| ||| Sbjct 240206 CTGGCCGAAGGCTTCCCGGTGCTGACCACCAAGAAGCTGCACCTGAAGTCGATCATCCAC 240265 Query 202663 GAGCTGCTGTGGTTCCTGAAAGGGGACACCAACATCAGTTACCTGAACGATAACGGGGTC 202722 || ||||||||||||||| | || |||||||||||| | |||||||| || |||| || Sbjct 240266 GAACTGCTGTGGTTCCTGCAGGGCGACACCAACATCCGCTACCTGAAGGAACACGGCGTG 240325 Query 202723 ACTATCTGGGACGAATGGGC 202742 ||||||||||| ||||| Sbjct 240326 CGCATCTGGGACGAGTGGGC 240345 >seq163424 Length=1083 Score = 149 bits (164), Expect = 1e-30 Identities = 153/200 (77%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 202543 AAGAAAGACCGTACCGGCACCGGCACGCGCTCCTTGTTCGGGGCCCAGATGCGGTTTGAC 202602 |||| || || |||||||||||||| | |||| || |||||||| ||||| Sbjct 750 AAGAGTGATCGCACCGGCACCGGCACTTACAGTGTGTTTGGCCATCAGATGCGCTTTGAT 809 Query 202603 CTGACCGAAGGCTTCCCACTGGTGACCACGAAAAAGGTTCACCTCCGTTCTATCATTCAC 202662 ||| |||| ||||| || ||||||||||| || ||| ||| ||| || ||||| ||| Sbjct 810 CTGGCCGAGGGCTTTCCGCTGGTGACCACCAAGAAGTGTCATCTCAAGTCCATCATCCAC 869 Query 202663 GAGCTGCTGTGGTTCCTGAAAGGGGACACCAACATCAGTTACCTGAACGATAACGGGGTC 202722 |||||||||||||| || | || || ||||||||| | || ||||| || ||||| ||| Sbjct 870 GAGCTGCTGTGGTTTTTGCAGGGCGATACCAACATCCGGTATCTGAAGGAAAACGGCGTC 929 Query 202723 ACTATCTGGGACGAATGGGC 202742 | ||||||||||| ||||| Sbjct 930 TCCATCTGGGACGAGTGGGC 949 >seq21230 Length=25512 Score = 109 bits (120), Expect = 9e-19 Identities = 224/328 (68%), Gaps = 14/328 (4%) Strand=Plus/Minus Query 203290 CTATCGTGTCAGTTGTATCAGCGCAGCGCCGATGTCTTCTTAGGCGTGCCGTTTAACATC 203349 || || || || ||||||| ||||| || ||||| ||| |||| || || ||||| || Sbjct 8686 CTCTCATGCCAACTGTATCAACGCAGTGCTGATGTATTCCTAGGTGTTCCATTTAATATT 8627 Query 203350 GCCTCGTATGCTTTACTGACTGAGATGGTTGCTCA-GCAGGTCAACATGGTGGCCGAGGA 203408 || ||||| |||| || | ||| |||| || | | || |||| | | | Sbjct 8626 GCGAGTTATGCCCTACTTACGCATATGATTGCGCAAGTATGTGGTTTGGGTGTTGGTG-A 8568 Query 203409 GTTCGTCTGGACAGGCGGTGATACACATCTGTATTCCAACCATCTGGAGCAGGCCCGTCT 203468 || |||||||||||||| ||||||||| | ||| |||||||| | || ||||| | | Sbjct 8567 CTTTGTCTGGACAGGCGGCGATACACATTTATATGCCAACCATTTTGAACAGGCACAATT 8508 Query 203469 GCAGTTAACTCGTGACCCGCACCCATTACCGCGTCTGAAATTCAAACGTAAGCCCGAG-T 203527 || | | ||||| |||| || || | ||| |||| ||| || || ||| | Sbjct 8507 ACAACTTAGCCGTGAGCCGCTACCGTT---GTGTC---AATTAAAATTAAATCCTGAGAT 8454 Query 203528 C-----TATCTTCGACTACCAGTTCGAAGACTTTGAAATCGAAGGCTACGTTTCCCACGA 203582 | ||| ||||||| | || ||||| ||||||||| ||| || | || ||| Sbjct 8453 CACTGATATTTTCGACTTTAAATTTGAAGATATTGAAATCGTAGGATATGAATCACACCC 8394 Query 203583 CGCCATCAAAGCACCGGTTGCCATTTAA 203610 || ||||||||||| ||||| ||||| Sbjct 8393 AGCGATCAAAGCACCTGTTGCAGTTTAA 8366 >seq33415 Length=13873 Score = 93.3 bits (102), Expect = 7e-14 Identities = 63/71 (89%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 2628 AGTAGTTCAATTGGTAGAGCGTCGGTCTCCAAAACCGGTTGTTGGAGGTTCGAGTCCTCT 2687 ||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| Sbjct 12346 AGTAGTTCAATTGGTAGAGCGTCGGTCTCCAAAACCGAATGTTGGGGGTTCGAGTCCCTC 12287 Query 2688 CTTCCCTGCCA 2698 || ||||||| Sbjct 12286 CTGGCCTGCCA 12276 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 786543954456000