Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_031018.1 Length=39274 Score E Sequences producing significant alignments: (Bits) Value seq34826 113 1e-20 >seq34826 Length=13225 Score = 113 bits (124), Expect = 1e-20 Identities = 210/306 (69%), Gaps = 2/306 (1%) Strand=Plus/Minus Query 31090 TGACCCCAGAAGGACTTGCGGCTGCGGTGGATAAGTACGCCAATGATAAGGCTTACGGTA 31149 ||||| | || | ||| ||| || || || ||||||||||| || ||||| || || | Sbjct 5946 TGACCACTGAGGAGCTTCAGGCGGCAGTCGAGAAGTACGCCAACGACAAGGCGTATGGCA 5887 Query 31150 TCTCTCACACCGACCTATTCGAGCGCTCG-TCTGTCATGGAAGAGAACATCAACGGTCTG 31208 || ||| |||||| ||| | ||| || | | || ||| || | || | | Sbjct 5886 TCAGCCACTCCGACCGCTTCACG-GCTGACTCGCTGGTAGAGGAGCACCTGAAGGACGGG 5828 Query 31209 GTGGGTCTGGAGAACAACAACTTCCTTGAGGCCCGTAACCTGTTCGATAGCGATATGGCT 31268 | || |||||||||||| ||| ||| || || |||||||| ||||| ||||||| | Sbjct 5827 GCAGGCCTGGAGAACAACGACTACCTCGAAGCTCGTAACCTCTTCGACTCCGATATGTCG 5768 Query 31269 ATCATCCTGCCAAACGGTCAACCGTTCAATGTGAACAGTCTCCGTGAGTGGGACATGGAT 31328 |||| | ||| |||| || |||||| |||||| ||||| || | || || | Sbjct 5767 ATCACCGCGCCTGACGGCCAGCCGTTCGCTGTGAATGACCTCCGAGACTTCAACCTGCTT 5708 Query 31329 AAGATTGTCCCGGCGTACAACCGTCGAGTCAATGGGGACATTGCTATCATGGCAGGAACA 31388 | | |||||| |||| |||| | ||||| || ||||| || |||||| || || Sbjct 5707 CGGGTGGTCCCGCAGTACGACCGCAGGGTCAACGGTGACATCGCCCTCATGGGTGGCACC 5648 Query 31389 GGGAAG 31394 |||||| Sbjct 5647 GGGAAG 5642 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 125286473891552