Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_031029.1 Length=93686 Score E Sequences producing significant alignments: (Bits) Value seq12585 89.7 3e-13 seq140 84.2 1e-11 seq68 84.2 1e-11 seq1 84.2 1e-11 >seq12585 Length=48618 Score = 89.7 bits (98), Expect = 3e-13 Identities = 165/236 (70%), Gaps = 12/236 (5%) Strand=Plus/Minus Query 49004 ATCCCCGGATCCATGGGCACCAAGTCCTATGTCGTCCGCGGCAAAGGGAATGAGTCCGGC 49063 |||||||| |||||||| ||||| || |||| |||||| ||||| ||| | Sbjct 43486 ATCCCCGGCTCCATGGGGGCCAAGAGCTTCATCGTACGCGGCCTGGGGAACGAGGAAGCG 43427 Query 49064 CTCTTCTC-TGCGCCCCATGGTGCCGGCCGTCAGTATTCGC-GCACCCAGGCCAAGAAGC 49121 ||| ||| ||| || | || |||||||| | || || | ||| |||| ||||||| Sbjct 43426 TTCTGCTCCTGCAGCC-ACGGCGCCGGCCGA-ACCATGAGCCGTACCAAGGCGAAGAAGC 43369 Query 49122 TGTTCACCCTGGATGACCTCGCCGACCGAATGAAGGGCA----TCGAATACCGCCACGGC 49177 |||| ||| |||| |||| || | | | ||| |||||| ||| | | | Sbjct 43368 TGTTTACCGTGGACGACCA----GATCAAGGCCACGGCCCACGTCGAATGCCGAAAGGAC 43313 Query 49178 GAAGAGTGGATCGACGAGATCCCGGACGCCTACAAGGACATCGACCAGGTGATGGA 49233 | || ||||||||| |||||| ||||||||||||||||||||||| ||||| Sbjct 43312 GCCGACGTGATCGACGAAATCCCGATGGCCTACAAGGACATCGACCAGGTAATGGA 43257 Score = 84.2 bits (92), Expect = 1e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 48171 TGCCGTTCATCCATCCTCACGTCGCCCTCATGCCGGATGCACACGGCGGCAAAGGATCTG 48230 ||||||||||| ||| | || | |||||||| | ||| || || || || Sbjct 44301 TGCCGTTCATCTTCAAGCACCTGGCGGTGATGCCGGACGTGCACCTGGGTAAGGGCTCGA 44242 Query 48231 CCGTCGGCACGGTGATTCCCACGGTGGACGCCGTGATCCCGGCCGCGGTCGGCGTGGACA 48290 || |||||| ||||| |||||||| | ||| | |||||||| || || || ||||| | Sbjct 44241 CCATCGGCAGCGTGATCCCCACGGTCGGCGCGATTATCCCGGCGGCCGTTGGTGTGGATA 44182 Query 48291 TCGGCTGCGGCATGATCGGCG 48311 |||| ||||||||||||| || Sbjct 44181 TCGGTTGCGGCATGATCGCCG 44161 >seq140 Length=372893 Score = 84.2 bits (92), Expect = 1e-11 Identities = 112/155 (72%), Gaps = 3/155 (2%) Strand=Plus/Minus Query 6722 GGCGTTGGAGCGGGAGAACCGTGAACTGCGGCGAGCGAACACGATCTTGAAGCAGGCTTC 6781 |||| | |||||||||||||| |||||||| | ||||| |||| || |||| || Sbjct 158708 GGCGCTTGAGCGGGAGAACCGCGAACTGCGCCAGTCGAACGAGATCCTGCGCAAGGCGTC 158649 Query 6782 GGCTTTCTTTGC---GGCGGAGATCGACCGCCCACAGCGCTGATCGTGGAGTTCGTCGCG 6838 || | ||||| ||||||| ||||||||| | | |||| |||| ||| ||| Sbjct 158648 AGCGTATTTTGCGATGGCGGAGCTCGACCGCCGATCGAAGTGATGGTGGGATTCATCGAC 158589 Query 6839 GCTCACCGCGATGAACACGGAGTCGATCCGATCTG 6873 || || || ||| ||||| ||||| |||||||| Sbjct 158588 GCGCATCGGAATGCGCACGGGGTCGAGCCGATCTG 158554 >seq68 Length=444459 Score = 84.2 bits (92), Expect = 1e-11 Identities = 112/155 (72%), Gaps = 3/155 (2%) Strand=Plus/Plus Query 6722 GGCGTTGGAGCGGGAGAACCGTGAACTGCGGCGAGCGAACACGATCTTGAAGCAGGCTTC 6781 |||| | |||||||||||||| |||||||| | ||||| |||| || |||| || Sbjct 221801 GGCGCTTGAGCGGGAGAACCGCGAACTGCGCCAGTCGAACGAGATCCTGCGCAAGGCGTC 221860 Query 6782 GGCTTTCTTTGC---GGCGGAGATCGACCGCCCACAGCGCTGATCGTGGAGTTCGTCGCG 6838 || | ||||| ||||||| ||||||||| | | |||| |||| ||| ||| Sbjct 221861 AGCGTATTTTGCGATGGCGGAGCTCGACCGCCGATCGAAGTGATGGTGGGATTCATCGAC 221920 Query 6839 GCTCACCGCGATGAACACGGAGTCGATCCGATCTG 6873 || || || ||| ||||| ||||| |||||||| Sbjct 221921 GCGCATCGGAATGCGCACGGGGTCGAGCCGATCTG 221955 >seq1 Length=1655743 Score = 84.2 bits (92), Expect = 1e-11 Identities = 112/155 (72%), Gaps = 3/155 (2%) Strand=Plus/Plus Query 6722 GGCGTTGGAGCGGGAGAACCGTGAACTGCGGCGAGCGAACACGATCTTGAAGCAGGCTTC 6781 |||| | |||||||||||||| |||||||| | ||||| |||| || |||| || Sbjct 581817 GGCGCTTGAGCGGGAGAACCGCGAACTGCGCCAGTCGAACGAGATCCTGCGCAAGGCGTC 581876 Query 6782 GGCTTTCTTTGC---GGCGGAGATCGACCGCCCACAGCGCTGATCGTGGAGTTCGTCGCG 6838 || | ||||| ||||||| ||||||||| | | |||| |||| ||| ||| Sbjct 581877 AGCGTATTTTGCGATGGCGGAGCTCGACCGCCGATCGAAGTGATGGTGGGATTCATCGAC 581936 Query 6839 GCTCACCGCGATGAACACGGAGTCGATCCGATCTG 6873 || || || ||| ||||| ||||| |||||||| Sbjct 581937 GCGCATCGGAATGCGCACGGGGTCGAGCCGATCTG 581971 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 299012136133012