Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_031078.1 Length=50082 Score E Sequences producing significant alignments: (Bits) Value seq363 208 2e-49 seq1 134 4e-27 seq27787 127 7e-25 >seq363 Length=289854 Score = 208 bits (230), Expect = 2e-49 Identities = 282/387 (73%), Gaps = 12/387 (3%) Strand=Plus/Plus Query 40027 AGGGCTTGTCCAGCACGCGCGCCGCGTCCTTCATCGCGT--TGCGC-GCCTTGATCCGAC 40083 ||| |||| || ||||||||||| |||| || | || | ||| ||| || | | Sbjct 188344 AGGACTTGCCCTGCACGCGCGCCACGTCGCGCACCACGGCCTTCGCCGCCATGGTGC--- 188400 Query 40084 CGAAGGTCCCGATCTGTGCGACCTTGTCCGCCCCGTACTTCTCGGTGACGTACCTGATCA 40143 ||||||| |||||| | ||| || ||||| | | ||| |||||| ||| | Sbjct 188401 CGAAGGTGATGATCTGCGACACCGCTTCGCGGCCGTAGTGCCCGGCCACGTACTCGATGA 188460 Query 40144 CG---TCGCCCCGTCGCCGGTCATCGAAGTCGATGTCAACGTCGGGCATGGACACGCGCT 40200 || |||| || | | | || |||||||||||| | |||||||||||||||||||| Sbjct 188461 CGCGGTCGCGCCCTTCCATG-CA--GAAGTCGATGTCGAAGTCGGGCATGGACACGCGCT 188517 Query 40201 CGGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGCGGGATGGGGTCCAGGTCTGTGATGC 40260 |||| || ||||| |||||||| | || ||| | ||| || |||||||| |||||| Sbjct 188518 CGGGATTGAGGAAGCGCTCGAACAGCAGGTCGTACTTGATCGGATCCAGGTCGGTGATGA 188577 Query 40261 CGAGGCAGTAGGCGACCAGCGAACCGGCAGCCGAGCCACGTCCGGGTCCGACCCACACGC 40320 || |||| || |||||||| ||||| | || || || || || || ||| ||||| Sbjct 188578 ACAGCGAGTAAGCCACCAGCGAGCCGGCGCCGGAACCGCGACCCGGCCCCACCGGCACGC 188637 Query 40321 CGTTCTCCTTGGCCCAGCCGATGAAGTCGGCGACGACCAGGAAGTAGGACGGGAACCCCA 40380 |||| | ||||||||||| ||||||||| ||||| |||||||||| ||| || |||| Sbjct 188638 CGTTGTTCTTGGCCCAGCGGATGAAGTCCATGACGATCAGGAAGTAGCCCGGAAAACCCA 188697 Query 40381 GCTGGATGATCATGTCGATCTCGTACT 40407 |||| |||| |||| || |||| ||| Sbjct 188698 TCTGGTTGATGATGTTGAGCTCGAACT 188724 Score = 168 bits (186), Expect = 2e-37 Identities = 485/736 (66%), Gaps = 40/736 (5%) Strand=Plus/Plus Query 39001 CCGAGGTGAGCACGGCCGCCATGTACTCGGCCGGGTAGTGCGTCTTCAGGTACGCCGTGC 39060 |||| | ||||| ||||||||| ||||||||||||| ||| ||| || | || || Sbjct 187336 CCGACGACAGCACCGCCGCCATGAACTCGGCCGGGTAATGCACCTTGAGCCAGGCGGTCT 187395 Query 39061 GGTAGGCGATGAGACCGTACGCCGCAGAGTGCGCCTTGTTGAAGGCGTACCCGGCGAAGG 39120 |||| | | || |||| || || ||||||| |||||||||| |||| |||||||| Sbjct 187396 GGTACGACACCAGCGCGTAGGCGGCCGAGTGCGACTTGTTGAAGCCGTAGCCGGCGAACT 187455 Query 39121 GTACGAGCACGTCCCACA--CCGCCTGGATGGCACCGTCCGAGTAGCCTCGCTCGCGCGC 39178 | | | ||| | | ||||| | ||| | | ||| ||| ||||||| || Sbjct 187456 TCTCCATGAGGTCGAAGATGCCGCCGGCCTGGTCCGGGTCGAC--GCCGCGCTCGCCCGA 187513 Query 39179 TCCCTTCTGGAAGTTCACGAACTCCTTGGCCAGAACCTCGGGCTTCTTCTTGCCCATGGC 39238 || | | ||| || ||| ||||||||||| ||||||||||||||||||||||||| Sbjct 187514 ACCTTCCATGAACTTGACGCGCTCCTTGGCCATTTCCTCGGGCTTCTTCTTGCCCATGGC 187573 Query 39239 TCGGCGGAGAAGGTCGGCCTGACCCAGGCTGTACCCAGCGAGGATCTGTGCCGCCTTCTG 39298 |||||||| | |||||| ||||| || || || || | ||| || || | Sbjct 187574 GCGGCGGAGCATGTCGGCGCCGCCCAGCGAATAGCCGGCCAGCACCTGGGCGATCTGCAT 187633 Query 39299 CACCTGCTCCTGGTAGATGACCAGCCCGTAGGTCGGCCCCAGGATCTCGGCAAGCGGCTC 39358 |||||| |||||||||| || | |||||||| | ||| | ||| | Sbjct 187634 CACCTGATCCTGGTAGAGGATGACACCGTAGGT---------GTTCT---CCAGCACCGG 187681 Query 39359 CTCCACCTCGGG--GTGGATCGGCGTGATCGCCTGCTGCCCGTTCTTGCGGAGGGCGTAG 39416 ||||| |||||| | |||| ||| ||| | || | |||| ||||||| | | || Sbjct 187682 CTCCAGCTCGGGATGCGGATAGGCCACGTCGGC-GC-GGCCGTGCTTGCGGTTGATGAAG 187739 Query 39417 TTCGT-GTGCGAGCCCACGCCCATCGGACCCGGACGGTACAGCGCGACGACGGCGCTGAT 39475 |||| | | |||| ||| ||||||||| || |||||||| || | || | Sbjct 187740 -TCGTCGACCATGCCCGACTCCAGCGGACCCGGGCGATACAGCGCCACCAGTGCCACCAC 187798 Query 39476 GTCCTCGAAGTTGTCCGGCTTCAGCAGGCGGAGCAGTGAGCGCATCGCGCCGC-CG--TC 39532 |||||||||| ||||| ||| || ||| | || ||||| || || Sbjct 187799 GTCCTCGAAGCGCGAAGGCTTGAGCTTCTTGATCAG---CTCCTTCATGCCGCGCGATTC 187855 Query 39533 GAGCTGGAAGACCGAGAGCGTGTCGCCCCTGGCCAGCAGCTCGTAGGTAGCAACGTCGTC 39592 ||||||||| || | | || | |||| || || |||| ||||| | ||| | Sbjct 187856 GAGCTGGAACACGGCGGTGGTCTTGCCCTCGGACATGAGCTGGTAGGGACGCGGGTCATT 187915 Query 39593 CAGCGGGATGTTCTCCAGGTCGA-----CGTGCTCCC-------CACGGTTGGCGCGGAT 39640 ||||||||| ||| | ||||| || | ||| | || |||||| ||| Sbjct 187916 GAGCGGGATGCGCTCGATGTCGATCGGCGGTTCGCCCAGGGCGGCGCGCTTGGCGTTGAT 187975 Query 39641 GTTCTCGACCGCGTCGCCCATGATCGTGAGGTTCCGGAGCCCGAGGAAGTCCATCTTCAC 39700 || || | ||| | | ||||| || || | || || ||||||||||| | ||| || Sbjct 187976 GTCCTTCAGCGCCCAGTCGATGATGGTCAGCGTGCGCAGGCCGAGGAAGTCGAACTTGAC 188035 Query 39701 CGCGCCCAGGCTCTCG 39716 | ||||| | |||| Sbjct 188036 CAGGCCCACGGCCTCG 188051 >seq1 Length=1655743 Score = 134 bits (148), Expect = 4e-27 Identities = 180/248 (73%), Gaps = 2/248 (1%) Strand=Plus/Minus Query 40166 GAAGTCGATGTCAACGTCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGAT 40225 |||||||||||| | ||||||||| ||||| || || ||||||||||| || ||||| | Sbjct 660823 GAAGTCGATGTCGAAGTCGGGCATCGACACCCGTTCCGGGTTCAGGAAGCGTTCGAACAG 660764 Query 40226 GAGCCCGTGCGGGATGGGGTCCAGGTCTGTGATGCCGAG-GCAGTAGGCGACCAGCGAAC 40284 ||| | | | | ||||| || || |||||| || ||| || || ||||| || | Sbjct 660763 CAGCGCATAGCGCAGCGGGTCAAGATCGGTGATGGTCAGCGCA-TAAGCCACCAGAGAGC 660705 Query 40285 CGGCAGCCGAGCCACGTCCGGGTCCGACCCACACGCCGTTCTCCTTGGCCCAGCCGATGA 40344 | ||| |||| || || || || |||||| | | | | | |||||||||| ||||| Sbjct 660704 CTGCACCCGACCCCCGCCCCGGACCGACCGGGATGGCATGCGCCTTGGCCCATTTGATGA 660645 Query 40345 AGTCGGCGACGACCAGGAAGTAGGACGGGAACCCCAGCTGGATGATCATGTCGATCTCGT 40404 | ||||| |||| ||||||||| ||| ||| || | | ||| ||||||| |||| Sbjct 660644 AATCGGCCACGATGAGGAAGTAGCCCGGAAACTTCATCCGCTCGATAATGTCGAGCTCGA 660585 Query 40405 ACTGAAGC 40412 | || ||| Sbjct 660584 ATTGCAGC 660577 >seq27787 Length=17407 Score = 127 bits (140), Expect = 7e-25 Identities = 227/328 (69%), Gaps = 20/328 (6%) Strand=Plus/Plus Query 39018 GCCATGTACTCGGCCGGGTAGTGCGTCTTCAGGTACGCCGTGCGGTAGGCGATGAGACCG 39077 |||||| || ||||||||||||| ||| || | || || |||||| || || || Sbjct 1 GCCATGAACGGCGCCGGGTAGTGCGCCTTGAGCCAGGCGGTCTGGTAGGAGACCAGGCCA 60 Query 39078 TACGCCGCAGAGTGCGCCTTGTTGAAGGCGTACCCGGCGAAGGGTACGAGCACGTCCCAC 39137 || || || ||||||| |||||||||| |||| |||||||| | | | || ||| | Sbjct 61 TAGGCTGCGGAGTGCGACTTGTTGAAGCCGTAGCCGGCGAACTTTTCTACCAGGTCAAA- 119 Query 39138 ACCGCCTGGATGGCACCGTCCGAGTA--GCCTCGCTCGCGC-----GCTC--CCTTCTG- 39187 |||| |||| || ||| || ||| | | || | ||||| Sbjct 120 --------GATGTTACCGGCC-AGTTCCGCGTCGATGTTGTTGTTGGCACAACCTTCGAT 170 Query 39188 GAAGTTCACGAACTCCTTGGCCAGAACCTCGGGCTTCTTCTTGCCCATGGCTCGGCGGAG 39247 |||| || || |||||||| ||||||||||||||||||||||||| ||||| || Sbjct 171 GAAGCCGCCGCGCTGCTTGGCCATCTCCTCGGGCTTCTTCTTGCCCATGGCGCGGCGCAG 230 Query 39248 AAGGTCGGCCTGACCCAGGCTGTACCCAGCGAGGATCTGTGCCGCCTTCTGCACCTGCTC 39307 | ||| |||||||||||| | || ||| | | || ||| || || | |||||| || Sbjct 231 CATGTCCGCCTGACCCAGGGTATAGCCACCCATGACCTGGGCGATCTGCATCACCTGTTC 290 Query 39308 CTGGTAGATGACCAGCCCGTAGGTCGGC 39335 |||||| | || | |||||||||||| Sbjct 291 CTGGTACAGGATGATGCCGTAGGTCGGC 318 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 159798050245408