Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_031098.1 Length=40749 Score E Sequences producing significant alignments: (Bits) Value seq23 948 0.0 seq1110 154 4e-33 seq40996 116 1e-21 seq100 116 1e-21 seq152 93.3 1e-14 >seq23 Length=559261 Score = 948 bits (1050), Expect = 0.0 Identities = 876/1106 (79%), Gaps = 3/1106 (0%) Strand=Plus/Plus Query 29785 ttttttAACCTGCACGCCAAAATTGGCGACCCATAACTTTAAAATTCAATCCATTTTGCT 29844 ||| |||||| |||||||||||||| || |||||||| |||||||| || || ||||| | Sbjct 181031 TTTATTAACCCGCACGCCAAAATTGACGCCCCATAACCTTAAAATTTAAGCCGTTTTGTT 181090 Query 29845 CCGTGACTTCACGATCTCTGTATTTAGGATTTAGGCTGTGCAGAATCAGTTTCCCGCCTT 29904 | || ||||| | ||| | ||||| ||||| |||||||| | ||| | || || |||| Sbjct 181091 CTGTTACTTCTCTATCGCGATATTTGGGATTAAGGCTGTGTAAAATTAACTTTCCACCTT 181150 Query 29905 CTTCCTTGAAAATCTGCTTAATCATGCCTTCACCCTCAAAGTAAACAGCATAAATTTGAC 29964 |||| || || |||||||||||||||||||| |||||||||||||||||||| || | | Sbjct 181151 CTTCTTTAAATATCTGCTTAATCATGCCTTCGCCCTCAAAGTAAACAGCATAGATCTCCC 181210 Query 29965 CATCGATAATGTCGGTTTGGGATATATCAATGCCAACCAAATCCCCATCATCAATCTTGT 30024 |||| || || || || || || |||||||| ||||| | |||| ||||| ||| || Sbjct 181211 CATCAATGATTTCTGTCTGTGAAATATCAATCCCAACAAGATCCTGATCATGAATAAAGT 181270 Query 30025 CCGCCATGCTGTCGCCTTTAGCCTTGATGATGCGCATGCAATCAGGATGAACAttttttt 30084 | | ||||||||| || || || |||||||| ||||| | |||| |||| ||| Sbjct 181271 CAGACATGCTGTCACCCTTCGCTTTGATGATTCGCATACTTCTCGGATCTACATATTTCC 181330 Query 30085 GTTTaaaaaaaCTAGGTGGGAATGGCTGTTTTCCATTGATCACATCAAAGTGAAACTCTA 30144 | ||||| ||| ||||| || || || || || |||||||||||||| || | Sbjct 181331 TCTGGAAAAACGAAGGGGGGAAAGGGAACTTACCGTTAATAACATCAAAGTGAAATTCAA 181390 Query 30145 TAGACTCTCCTGTGCCACAAGAAAAACTTGCCTCTACCACATCAATCCAGATAAATCCAT 30204 | || || ||||||||||| |||||| |||| ||||||||||||||||| |||||||| | Sbjct 181391 TTGATTCACCTGTGCCACATGAAAAATTTGCTTCTACCACATCAATCCAAATAAATCCGT 181450 Query 30205 CATCCCCACCATACTCAACTACTGACGGGCTTTGAATATCATTCACATCAAATGATGATT 30264 || |||| || || || | || | || || ||||| | |||||| || | Sbjct 181451 TTTCAGTTTCATAATCCACGACAGTTGGTTTGTGGATTTCATTAATATCAAAAGAAACAT 181510 Query 30265 CATCTTTCTTGGATAGACCGTGCTTATCCATAAATTCTTGCATGTTGAAGTTGGTTAAAT 30324 ||||||| || | |||||| ||||||| |||||||| ||||||||||| |||||||| | Sbjct 181511 CATCTTTTTTTGTTAGACCATGCTTATTCATAAATTGCTGCATGTTGAAATTGGTTAAGT 181570 Query 30325 TTTGTTTTTTCTTCCCGTTTAGAAGCCATCCGGCATCAACTTCTAAAAGTTCGGCCAACT 30384 | | ||||| || || || |||||||| || |||||||| || || | || |||| || Sbjct 181571 TCTCATTTTTTTTACCATTAAGAAGCCACCCAGCATCAACCTCCAATAACTCAGCCAGCT 181630 Query 30385 TATCCAAAGTCTCTTTGCCAATCTGTCCTTTTTTCCATTTAGAAGGCGCTTGAGGAGTCA 30444 | || ||||| ||||||| ||||| || |||||||| |||||||| ||||||||||| | Sbjct 181631 TGTCTAAAGTTTCTTTGCTGATCTGACCCTTTTTCCACTTAGAAGGTGCTTGAGGAGTTA 181690 Query 30445 GGCCAATCATTGTGGCAGCTTTAGACCATGATAATTTCTTTGCTTTCAGTGCTTCCTGAA 30504 ||||||| ||| || ||||||||||| ||||| ||||||||||||||||| ||||||| Sbjct 181691 AACCAATCAATGTAGCTGCTTTAGACCAGGATAACTTCTTTGCTTTCAGTGCATCCTGAA 181750 Query 30505 TGCGCTCAACCATTGTGCTCATAACTTTCATCGCGTGAAACCTTTGGTTAAATTTTCGTA 30564 |||| ||||||||||||||||||||| |||| |||||||||||||||||||||| ||| Sbjct 181751 TGCGATCAACCATTGTGCTCATAACTGCCATCATGTGAAACCTTTGGTTAAATTTT-GTA 181809 Query 30565 -TAAAAAATATAAAATTGTAAGCAACCATAGGTTGAAAATAATTTTAACTCATGGTTTAA 30623 |||||| |||||||| ||||||||||||||||||| ||| ||||||||||||||||| Sbjct 181810 GGAAAAAAATTAAAATTGAAAGCAACCATAGGTTGAAATTAAATTTAACTCATGGTTTAA 181869 Query 30624 TAAAAATATGAAACTGGTTTAAATAAGGTTTAAGATATGAATCCTATTCAACAAGCCATT 30683 | || | || |||||||| |||||||||| ||||||||||||| |||||||| ||| Sbjct 181870 TTTAATCGTTAATATGGTTTAAGTAAGGTTTAA-ATATGAATCCTATACAACAAGCTATT 181928 Query 30684 GATGCTGTTGGTGGGCGAACCAATGCAGCGTCATTACTTGGGATCTCCTACGTTGCTGTA 30743 |||||||||||||| ||||| ||||| ||||||| ||||| |||||||||||||| Sbjct 181929 GATGCTGTTGGTGGAAGAACCTCGGCAGCAGCATTACTCGGGATTTCCTACGTTGCTGTG 181988 Query 30744 AGAAAGATGGCAGAAAAAGGTGTATTGCCACGTACTGATTACACAGGTGAAACCAACTAC 30803 | || ||||| ||||| ||||| || ||| | ||||| || || ||||| || || ||| Sbjct 181989 CGGAAAATGGCTGAAAAGGGTGTTTTACCAAGAACTGACTATACGGGTGAGACAAAATAC 182048 Query 30804 GCACAGATTCTTGCTGAGCACAGTAACGGGAAAGTGACTCAAGAATGGTTACTCGATAAA 30863 ||| ||||| |||| || | || || || ||| | || |||||||||| || |||||| Sbjct 182049 GCAGAGATTTTTGCAGAAAATAGCAAAGGCAAATTAACAAAAGAATGGTTGCTTGATAAA 182108 Query 30864 GCAAATCCAAAACATTTAGCGGCATA 30889 || ||||||||||||||||| || || Sbjct 182109 GCCAATCCAAAACATTTAGCAGCTTA 182134 Score = 187 bits (206), Expect = 6e-43 Identities = 130/147 (88%), Gaps = 2/147 (1%) Strand=Plus/Plus Query 28876 TGAGATTTATTAAACCAAAGGTATAAAATAAAAGCAAGCATAAATTAAACCATAGGTGAA 28935 ||||||||||||||||||||||||||| | ||| |||| ||||||||||||| ||||||| Sbjct 178446 TGAGATTTATTAAACCAAAGGTATAAATTTAAATCAAGTATAAATTAAACCAAAGGTGAA 178505 Query 28936 AATAATTTATGATTAGGTTTAAATATGCTTTAATAGGCAAAAGAAAACCCAC--ACGGGG 28993 |||||||||| ||||||||||| || |||||||| ||||||||||||||| |||| Sbjct 178506 AATAATTTATACCTAGGTTTAAATGTGATTTAATAGACAAAAGAAAACCCACCGCTGGGG 178565 Query 28994 TGGGTTATTTGGAGTTTATTGAGATGA 29020 ||||||| |||||||||||||||||| Sbjct 178566 TGGGTTAGATGGAGTTTATTGAGATGA 178592 >seq1110 Length=205023 Score = 154 bits (170), Expect = 4e-33 Identities = 263/376 (70%), Gaps = 4/376 (1%) Strand=Plus/Plus Query 22991 TATGATGATGGGGTGGGTGTTTGGACTATTGGTTTTGGAACCATTAAGTATCCGAATGGT 23050 ||||||||||| | || |||||||||||| | |||||| | | ||||| ||||| Sbjct 28350 TATGATGATGGAGCAGGCACTTGGACTATTGGATATGGAACAACGATTTATCCAAATGGA 28409 Query 23051 GTCCGAGTGAAAAAAGGTGATACCTGCACTGAACAGCAAGCTGAAACCTATTTGAAAAAT 23110 || |||| |||| |||||| |||||||||||| |||| || | ||||| || || Sbjct 28410 GTGAGAGTTAAAAGAGGTGAGACCTGCACTGAAAGTGAAGCAAAAGCTTATTTTCAACAT 28469 Query 23111 GATTTAACTAAGTTTGA-AGTAGCTATTAATAAATTAGTTAAAGTGCCTCTTAGTCAGAA 23169 |||||| | |||| | ||| | | ||| | | ||||| || | | | || || Sbjct 28470 GATTTATTAAGGTTTCAGCGTA-CAGTAAATCAGCTTGTTAATGTTTCATTAAAGCAAAA 28528 Query 23170 TCAATTCGATGCACTAGCATCTTTCACATATAATCTTGGTG-AAACCAATTTAGCAAATT 23228 ||| |||||||| || | ||| || || ||||| |||||| ||| |||||| || | Sbjct 28529 TCAGTTCGATGCCCTTGTATCATTGACTTATAACATTGGTGAAAATGCATTTAG-AACAT 28587 Query 23229 CAACTTTATTGAAGAAACTTAATAAAGGTGACTATCAAGGCGCTGCTGACCAATTCCTTG 23288 |||| ||||| ||| | || |||| ||||| ||| || || || || ||||| | Sbjct 28588 CAACATTATTAAAGTATCTAAATATGGGTGAATATTCAGCAGCAGCCGAACAATTTGGGG 28647 Query 23289 TCTGGAATAAGGCAGGAGGCAAAGTTATGAAAGGTCTAGTTCGTCGCCGAGAAGCAGAAC 23348 | ||||||||||| ||||| || || ||| || | || | || ||| | || ||| Sbjct 28648 TTTGGAATAAGGCTGGAGGGAATGTGATGCGTGGATTGGTGAGACGTCGACATGCTGAAA 28707 Query 23349 GAGCACTCTTTTTAAA 23364 || ||| ||| |||| Sbjct 28708 AAGAACTATTTCTAAA 28723 >seq40996 Length=10690 Score = 116 bits (128), Expect = 1e-21 Identities = 186/267 (70%), Gaps = 0/267 (0%) Strand=Plus/Plus Query 33263 TGAAATCTCAAAAGGGTTGAAAGCAATCGCTAAAGAATTTGATTGCGTTGTATTCGCTCT 33322 |||||| ||| | | | ||||| | || |||||| | |||| ||| | || || Sbjct 1355 TGAAATTTCACGAAGCCTTAAAGCCTTGGCCAAAGAAATGAATTGTCCTGTGATTGCACT 1414 Query 33323 ATCTCAGCTTAGCCGCAACTTAGAGAACAGACCTAACAAACGTCCAGTTAATGCTGATCT 33382 || ||||||| ||| | |||||||| |||| |||||||| || |||| | || | Sbjct 1415 TTCACAGCTTAACCGTAGTCTAGAGAACCGACCAAACAAACGCCCTGTTATGTCAGACTT 1474 Query 33383 CCGCGAATCTGGCCAATTGGAGCAGGATGCGGACGTGATTCTATTCATTTACCGCGACGA 33442 || ||||| || | ||||||||||| || |||| | ||||| ||||| || || Sbjct 1475 ACGTGAATCAGGAGCGATCGAGCAGGATGCCGATTTGATCATGTTCATCTACCGTGATGA 1534 Query 33443 AGTTTACGACAAGAACTCAAAAGATGCAGGAACTGCTGAAATCATCATCGGAAAGTGCCG 33502 ||| || |||| | |||||||| ||||| || || |||||||| ||||| || || Sbjct 1535 AGTCTATAACAAAGAATCAAAAGAAGCAGGCACAGCAGAAATCATTATCGGTAAACAACG 1594 Query 33503 TGATGGAGAGGTGGGAACTGTACGTCT 33529 | | || | | || ||||| ||||| Sbjct 1595 TAACGGTCCGATTGGTACTGTTCGTCT 1621 >seq100 Length=411593 Score = 116 bits (128), Expect = 1e-21 Identities = 188/268 (70%), Gaps = 2/268 (1%) Strand=Plus/Minus Query 33263 TGAAATCTCAAAAGGGTTGAAAGCAATCGCTAAAGAATTTGATTGCGTTGTATTCGCTCT 33322 |||||| || | | || |||||| | || |||||| | | ||| |||| | || | Sbjct 332093 TGAAATTTCGCGAAGCTTAAAAGCATTAGCAAAAGAAATGAACTGCCCTGTAATTGCATT 332034 Query 33323 ATCTCAGCTTAGCCGCAACTTAGAGAACAGACCTAACAAACGTCCAGTTAATG-CTGATC 33381 ||||||||| | ||| | | || || | || |||||||| ||||| |||| |||| Sbjct 332033 ATCTCAGCTCAACCGAAGTCTGGAAAATCGCCCAAACAAACGACCAGT-AATGTCTGACT 331975 Query 33382 TCCGCGAATCTGGCCAATTGGAGCAGGATGCGGACGTGATTCTATTCATTTACCGCGACG 33441 | || |||||||| | ||||| ||||| || ||||| | || ||||| || || | Sbjct 331974 TGCGTGAATCTGGAGCGATCGAGCAAGATGCCGATTTGATTATGTTTATTTATCGTGATG 331915 Query 33442 AAGTTTACGACAAGAACTCAAAAGATGCAGGAACTGCTGAAATCATCATCGGAAAGTGCC 33501 | ||||| |||| | || ||||| || ||||| || ||||||||||| || || | Sbjct 331914 AGGTTTATAACAAAGAATCTAAAGAGGCTGGAACAGCAGAAATCATCATTGGTAAACAGC 331855 Query 33502 GTGATGGAGAGGTGGGAACTGTACGTCT 33529 || ||||| | || ||||| ||||| Sbjct 331854 GTAATGGACCTATTGGTACTGTCCGTCT 331827 >seq152 Length=367798 Score = 93.3 bits (102), Expect = 1e-14 Identities = 127/175 (73%), Gaps = 2/175 (1%) Strand=Plus/Minus Query 33282 AAAGCAATCGCTAAAGAATTTGATTGCGTTGTATTCGCTCTATCTCAGCTTAGCCGCAAC 33341 ||||| || || ||||||||| ||||||| || || |||||||||| | ||| | Sbjct 267350 AAAGCCATGGCCAAAGAATTTAATTGCGTCATAGTCCTGTTATCTCAGCTCAACCGTGAA 267291 Query 33342 TTAGAGAACAGACCTAACAAACGTCCAGTTAATGCTGATCTCCGCGAATCTGGC-CAATT 33400 ||||||| |||| |||||| | ||| | | | ||| | |||||||| || ||||| Sbjct 267290 CTAGAGAAGCGACCAAACAAAAGACCAATGATGTCGGATTTACGCGAATCAGGTGCAATT 267231 Query 33401 GGAGCAGGATGCGGACGTGATTCTATTCATTTACCGCGACGAAGTTTACGACAAG 33455 | | || ||||| ||| ||| | ||| | ||| | ||||||||||| ||||| Sbjct 267230 GAA-CAAGATGCCGACCAAATTATTTTCTTGTACAGAGACGAAGTTTATAACAAG 267177 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 129996371663752