Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_031107.1 Length=246291 Score E Sequences producing significant alignments: (Bits) Value seq6372 190 3e-43 seq163424 176 7e-39 seq26 158 2e-33 seq33415 95.1 2e-14 seq21230 87.8 3e-12 seq44255 86.0 1e-11 >seq6372 Length=86001 Score = 190 bits (210), Expect = 3e-43 Identities = 224/303 (74%), Gaps = 0/303 (0%) Strand=Plus/Minus Query 201791 ATGAAACAATATCTGGACTTACTGCGTGATGTTCGCGAAAACGGGGATGTAAAAGCCGAC 201850 |||||||| || || ||| | |||| | || || || |||| | || | ||| Sbjct 39861 ATGAAACAGTACCTCGACCTGATGCGCCACGTGCGTGAGCACGGCACCTTCAAGGAAGAC 39802 Query 201851 CGTACCGGTACGGGCACCCTCTCTGTTTTCGGACGCCAGATGCGCTTTAACTTACAAGAA 201910 |||||||| ||||||||| | || ||||| ||||||||| || || | || Sbjct 39801 CGTACCGGCACGGGCACCTACAGCGTGTTCGGCTACCAGATGCGTTTCGACCTGGCCGAT 39742 Query 201911 GGTTTTCCGCTGGTCACCACCAAAAAGGTTCACCTTCGTTCAATCATCCATGAGCTGCTG 201970 ||||| || | ||||||||||| ||| ||||| || || |||||||| ||||||||| Sbjct 39741 GGTTTCCCCATCGTCACCACCAAGAAGTGCCACCTGCGCTCGATCATCCACGAGCTGCTG 39682 Query 201971 TGGTTCCTCATGGGTGACACCAACATCCAGTATTTGAAAGACAACAACGTCACCATCTGG 202030 ||||||||| ||| |||||||||||| |||| | || |||||| ||||| ||||||| Sbjct 39681 TGGTTCCTCCAGGGCGACACCAACATCAAGTACCTCAAGGACAACGGCGTCAGCATCTGG 39622 Query 202031 GACGAATGGGCGGATAAAAACGGTGACTTAGGCCCGGTGTACGGTAAGCAATGGCGTAGC 202090 ||||| ||||| || | ||||| || | |||||||| ||||| | || ||||| ||| Sbjct 39621 GACGAGTGGGCCGACGAGAACGGCAACCTCGGCCCGGTCTACGGCTACCAGTGGCGCAGC 39562 Query 202091 TGG 202093 ||| Sbjct 39561 TGG 39559 >seq163424 Length=1083 Score = 176 bits (194), Expect = 7e-39 Identities = 227/311 (73%), Gaps = 2/311 (1%) Strand=Plus/Plus Query 201784 GCACACCATGAAACAATATCTGGACTTACTGCGTGATGTTCGCGAAAACGGGGA-TGTAA 201842 |||| ||||||||||||||| ||| | |||| | || ||||| ||||| | ||| Sbjct 692 GCACCGCATGAAACAATATCTCGACCTGATGCGCCACGTGCGCGAGAACGGCACCTTTAA 751 Query 201843 AAGCCGACCGTACCGGTACGGGCACCCTCTCTGTTTTCGGACGCCAGATGCGCTTTAACT 201902 || || || ||||| || ||||| | ||| || || | |||||||||||| | Sbjct 752 GAGT-GATCGCACCGGCACCGGCACTTACAGTGTGTTTGGCCATCAGATGCGCTTTGATC 810 Query 201903 TACAAGAAGGTTTTCCGCTGGTCACCACCAAAAAGGTTCACCTTCGTTCAATCATCCATG 201962 | || || ||||||||||| |||||||| ||| ||| || || |||||||| | Sbjct 811 TGGCCGAGGGCTTTCCGCTGGTGACCACCAAGAAGTGTCATCTCAAGTCCATCATCCACG 870 Query 201963 AGCTGCTGTGGTTCCTCATGGGTGACACCAACATCCAGTATTTGAAAGACAACAACGTCA 202022 ||||||||||||| | ||| || |||||||||| |||| |||| || ||| |||| Sbjct 871 AGCTGCTGTGGTTTTTGCAGGGCGATACCAACATCCGGTATCTGAAGGAAAACGGCGTCT 930 Query 202023 CCATCTGGGACGAATGGGCGGATAAAAACGGTGACTTAGGCCCGGTGTACGGTAAGCAAT 202082 ||||||||||||| ||||| || | || || ||| | || ||||| || || | || | Sbjct 931 CCATCTGGGACGAGTGGGCAGACGAGAATGGCGACCTGGGGCCGGTCTATGGCTATCAGT 990 Query 202083 GGCGTAGCTGG 202093 |||| |||||| Sbjct 991 GGCGCAGCTGG 1001 >seq26 Length=549101 Score = 158 bits (174), Expect = 2e-33 Identities = 179/240 (75%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 201847 CGACCGTACCGGTACGGGCACCCTCTCTGTTTTCGGACGCCAGATGCGCTTTAACTTACA 201906 |||||| ||||| || |||||| ||| || ||||| | |||||||||||| || | Sbjct 240151 CGACCGCACCGGCACCGGCACCTACTCGGTGTTCGGCCACCAGATGCGCTTCGACCTGGC 240210 Query 201907 AGAAGGTTTTCCGCTGGTCACCACCAAAAAGGTTCACCTTCGTTCAATCATCCATGAGCT 201966 ||||| || ||| || | |||||||| ||| | ||||| || |||||||| || || Sbjct 240211 CGAAGGCTTCCCGGTGCTGACCACCAAGAAGCTGCACCTGAAGTCGATCATCCACGAACT 240270 Query 201967 GCTGTGGTTCCTCATGGGTGACACCAACATCCAGTATTTGAAAGACAACAACGTCACCAT 202026 |||||||||||| ||| ||||||||||||| || |||| || || ||| ||| Sbjct 240271 GCTGTGGTTCCTGCAGGGCGACACCAACATCCGCTACCTGAAGGAACACGGCGTGCGCAT 240330 Query 202027 CTGGGACGAATGGGCGGATAAAAACGGTGACTTAGGCCCGGTGTACGGTAAGCAATGGCG 202086 ||||||||| ||||| || | ||||| ||| | || ||||| ||||| | || ||||| Sbjct 240331 CTGGGACGAGTGGGCCGACGAGAACGGCGACCTCGGACCGGTCTACGGCTACCAGTGGCG 240390 >seq33415 Length=13873 Score = 95.1 bits (104), Expect = 2e-14 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 618 AGTAGTTCAACTGGTAGAGCGTCGGTCTCCAAAACCGAATGTTGCAGGTTCGAGTCCTGT 677 |||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 12346 AGTAGTTCAATTGGTAGAGCGTCGGTCTCCAAAACCGAATGTTGGGGGTTCGAGTCCCTC 12287 Query 678 CTCCCCTGCCAAATT 692 || ||||||| ||| Sbjct 12286 CTGGCCTGCCATATT 12272 >seq21230 Length=25512 Score = 87.8 bits (96), Expect = 3e-12 Identities = 145/207 (70%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 202490 CTTTCTTGTCAGCTCTATCAGCGTAGTGCGGACATGTTCCTTGGCGTACCGTTTAACATC 202549 || || || || || ||||| || ||||| || | ||||| || || || ||||| || Sbjct 8686 CTCTCATGCCAACTGTATCAACGCAGTGCTGATGTATTCCTAGGTGTTCCATTTAATATT 8627 Query 202550 GCGTCTTACGCCTTGCTGGTACACATGTTTGCACAAC-AGGCGAACATGGCGGTAGGCGA 202608 ||| ||| ||| | || || ||| |||| ||| | | | ||| || || || Sbjct 8626 GCGAGTTATGCCCTACTTACGCATATGATTGCGCAAGTATGTGGTT-TGGGTGTTGGTGA 8568 Query 202609 CTTCGTCTGGACAGGTGGTGATACGCATCTGTACTCCAACCATCTGGAACAAGCTGACCT 202668 ||| ||||||||||| || ||||| ||| | || |||||||| | ||||| || | | Sbjct 8567 CTTTGTCTGGACAGGCGGCGATACACATTTATATGCCAACCATTTTGAACAGGCACAATT 8508 Query 202669 CCAACTTACCCGTGACCCTAAACCGTT 202695 ||||||| |||||| || |||||| Sbjct 8507 ACAACTTAGCCGTGAGCCGCTACCGTT 8481 >seq44255 Length=9396 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 4032 CGTAGCTCAGTTGGTTAGAGCGCTCGCCTGATAAGCGGGAGGTCGGTAGTTCAAGTCTAC 4091 ||||||||||||||||||||||| | ||||||||| | |||||||||||||| | ||||| Sbjct 8503 CGTAGCTCAGTTGGTTAGAGCGCACCCCTGATAAGGGTGAGGTCGGTAGTTCGAATCTAC 8444 Query 4092 TCGAGACAACCA 4103 || | | |||| Sbjct 8443 CCGGGCCCACCA 8432 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 786227868190560