Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_031115.1 Length=39616 Score E Sequences producing significant alignments: (Bits) Value seq34826 80.6 7e-11 >seq34826 Length=13225 Score = 80.6 bits (88), Expect = 7e-11 Identities = 324/504 (64%), Gaps = 26/504 (5%) Strand=Plus/Minus Query 32244 AAGTATGCCAACGATAAAGCGTATGGTATCTCTCACTCAGACCAATTCCATGCAGAGTCA 32303 ||||| |||||||| || |||||||| ||| ||||| |||| ||| || || || Sbjct 5914 AAGTACGCCAACGACAAGGCGTATGGCATCAGCCACTCCGACCGCTTCACGGCTGACTCG 5855 Query 32304 GTCCTAGAGGAAATAGCTCC----GGACATCTCAGGGTTAGCTAACAACAAGTACCTTGA 32359 | ||||||| || || |||| |||| | | |||||| | ||||| || Sbjct 5854 CTGGTAGAGGA----GCACCTGAAGGACGGGGCAGGCCTGGAGAACAACGACTACCTCGA 5799 Query 32360 GGCTCGTAACCTTTTCGACTCTGACGTACCGGTGTTC---ATTGAGGGACAGCCATTCAA 32416 ||||||||||| |||||||| || | || | | ||| || ||||| ||| Sbjct 5798 AGCTCGTAACCTCTTCGACTCCGATATGTCGATCACCGCGCCTGACGGCCAGCCGTTCGC 5739 Query 32417 GGTTAATGACCTGAGGGAGTTTGA--TGCTTCCGTTATCCTCCCTGCGTATGACCGTCGA 32474 || |||||||| | || || | |||||| | | |||| ||| ||||| | Sbjct 5738 TGTGAATGACCTCCGAGACTTCAACCTGCTTCGG--GTGGTCCCGCAGTACGACCGCAGG 5681 Query 32475 GTTAATGGTGACATTGCTATCATGGGCGGTACAGGGAAGACCACAAAGGAACTCGTGGAA 32534 || || |||||||| || ||||||| || || |||||| ||| ||| | | ||| Sbjct 5680 GTCAACGGTGACATCGCCCTCATGGGTGGCACCGGGAAGGACAC-CCGGACCCTGAAGAA 5622 Query 32535 CA----CATAGGGAAGCTTAAGGAAGAAGCTAAGGCTACAGGGAAATCCGTCAAGGACGT 32590 || || || | || | ||| | | | || | || | || ||| | Sbjct 5621 CATGGTCAACGGAATGC-----GCCAAAGGTCCGCCCACGGCGAGGACGCTC-GGGAGGC 5568 Query 32591 AGAGTATCTGGAGGGAGCAGTTAAGATGCTCACCGGTCGTTCCCGCAGAGACCCTGAGGG 32650 || || || || || | |||||||||||||| || | || | || ||||| || Sbjct 5567 TGAATACCTCATGGACGCCCTGAAGATGCTCACCGGACGCGCTCGGCGCGATCCTGACGG 5508 Query 32651 CGGCTGGGAGACTATGGCTCGTGCAGTTCAGGACTTATCGTTCGTTGCGAAGAACGCCTA 32710 | ||||| ||| | || || | | | ||| | ||| | ||||||||||||| Sbjct 5507 CACCTGGGCGACCGTAGCGCGATCCTTGAACGACATCGGGTTTGCCACGAAGAACGCCTA 5448 Query 32711 CATGGGTGTTCAGAACTTCACGGA 32734 |||||| || |||||| |||| || Sbjct 5447 CATGGGCGTACAGAACATCACCGA 5424 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 126378531544496