Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_031127.1 Length=240761 Score E Sequences producing significant alignments: (Bits) Value seq6372 219 6e-52 seq26 197 2e-45 seq163424 172 8e-38 seq11470 91.5 2e-13 >seq6372 Length=86001 Score = 219 bits (242), Expect = 6e-52 Identities = 230/300 (77%), Gaps = 2/300 (1%) Strand=Plus/Minus Query 196011 CTGATGAAACAGTATTTGGAATTGATGCACACCGTGT-TGAACGAAGGTCACGAGAAAGC 196069 |||||||||||||| | || |||||| | |||| ||| | | || | || | Sbjct 39864 CTGATGAAACAGTACCTCGACCTGATGCGCCACGTGCGTGAGC-ACGGCACCTTCAAGGA 39806 Query 196070 TGACCGTACCGGCACGGGCACCATCTCTATTTTCGGGTATCAGATGCGTTTTGACCTGCG 196129 ||||||||||||||||||||| | | ||||| || ||||||||||| |||||| Sbjct 39805 AGACCGTACCGGCACGGGCACCTACAGCGTGTTCGGCTACCAGATGCGTTTCGACCTGGC 39746 Query 196130 CAAAGGGTTCCCGCTGGTCACCACCAAAAAGTTGCACCTGCGATCTATCATCCACGAACT 196189 | | || ||||| | ||||||||||| |||| |||||||| || ||||||||||| || Sbjct 39745 CGATGGTTTCCCCATCGTCACCACCAAGAAGTGCCACCTGCGCTCGATCATCCACGAGCT 39686 Query 196190 GTTGTGGTTCCTGAACGGCGACACCAACATCCAGTATCTGAAAGACAACAACGTCAGTAT 196249 | |||||||||| | ||||||||||||||| |||| || || |||||| |||||| || Sbjct 39685 GCTGTGGTTCCTCCAGGGCGACACCAACATCAAGTACCTCAAGGACAACGGCGTCAGCAT 39626 Query 196250 CTGGGATGAGTGGGCAGATGAAGATGGCGATCTTGGCCCCGTCTACGGTAAGCAGTGGCG 196309 |||||| |||||||| || || | ||| | || ||||| |||||||| | |||||||| Sbjct 39625 CTGGGACGAGTGGGCCGACGAGAACGGCAACCTCGGCCCGGTCTACGGCTACCAGTGGCG 39566 Score = 96.9 bits (106), Expect = 5e-15 Identities = 139/195 (71%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 196749 CTGTCCTGTCAGCTTTACCAGCGCAGTGCAGACGTCTTCCTCGGTGTCCCGTTCAACATC 196808 |||||||| ||||| ||||||||| || ||| |||||||||| || || ||||||||| Sbjct 39387 CTGTCCTGCCAGCTCTACCAGCGCTCGGCGGACATCTTCCTCGGCGTGCCCTTCAACATC 39328 Query 196809 GCTTCGTACGCTCTGTTGGTTCACATGGTGGCACAGCAGGT---CAATATGGTGGCGGGT 196865 || ||||| ||| || | |||||||| |||||| | || | |||| Sbjct 39327 GCCAGCTACGCCCTGCTGACGCTGATGGTGGC---GCAGGTCTGCGGCCTGCAGCCGGGC 39271 Query 196866 GATTTCGTCTGGACGGGCGGCGATACCCATCTGTACTCTAACCATCTGGAACAGGCCACG 196925 || ||| ||||||| ||||| || ||| |||||| | ||||| | || ||| || Sbjct 39270 GAGTTCATCTGGACCGGCGGTGACTGCCACCTGTACGCCAACCACATCGAGCAGACCGAC 39211 Query 196926 TTGCAGCTCTCCCGT 196940 ||||||| ||||| Sbjct 39210 CTGCAGCTGACCCGT 39196 >seq26 Length=549101 Score = 197 bits (218), Expect = 2e-45 Identities = 187/239 (78%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 196071 GACCGTACCGGCACGGGCACCATCTCTATTTTCGGGTATCAGATGCGTTTTGACCTGCGC 196130 ||||| |||||||| |||||| ||| | ||||| | |||||||| || |||||| | Sbjct 240152 GACCGCACCGGCACCGGCACCTACTCGGTGTTCGGCCACCAGATGCGCTTCGACCTGGCC 240211 Query 196131 AAAGGGTTCCCGCTGGTCACCACCAAAAAGTTGCACCTGCGATCTATCATCCACGAACTG 196190 |||| |||||| || | |||||||| ||| |||||||| || ||||||||||||||| Sbjct 240212 GAAGGCTTCCCGGTGCTGACCACCAAGAAGCTGCACCTGAAGTCGATCATCCACGAACTG 240271 Query 196191 TTGTGGTTCCTGAACGGCGACACCAACATCCAGTATCTGAAAGACAACAACGTCAGTATC 196250 ||||||||||| | |||||||||||||||| || ||||| || || ||| | ||| Sbjct 240272 CTGTGGTTCCTGCAGGGCGACACCAACATCCGCTACCTGAAGGAACACGGCGTGCGCATC 240331 Query 196251 TGGGATGAGTGGGCAGATGAAGATGGCGATCTTGGCCCCGTCTACGGTAAGCAGTGGCG 196309 ||||| |||||||| || || | ||||| || || || |||||||| | |||||||| Sbjct 240332 TGGGACGAGTGGGCCGACGAGAACGGCGACCTCGGACCGGTCTACGGCTACCAGTGGCG 240390 >seq163424 Length=1083 Score = 172 bits (190), Expect = 8e-38 Identities = 218/297 (73%), Gaps = 2/297 (1%) Strand=Plus/Plus Query 196014 ATGAAACAGTATTTGGAATTGATGCACACCGTGTTGAACGAAGGTCACGAGAAAGC-TGA 196072 |||||||| ||| | || |||||| | |||| | ||| | ||| ||| ||| Sbjct 699 ATGAAACAATATCTCGACCTGATGCGCCACGTGCGCGA-GAACGGCACCTTTAAGAGTGA 757 Query 196073 CCGTACCGGCACGGGCACCATCTCTATTTTCGGGTATCAGATGCGTTTTGACCTGCGCAA 196132 || |||||||| ||||| | | | || || |||||||||| ||||| ||| | | Sbjct 758 TCGCACCGGCACCGGCACTTACAGTGTGTTTGGCCATCAGATGCGCTTTGATCTGGCCGA 817 Query 196133 AGGGTTCCCGCTGGTCACCACCAAAAAGTTGCACCTGCGATCTATCATCCACGAACTGTT 196192 || || |||||||| |||||||| |||| || || || ||||||||||| ||| | Sbjct 818 GGGCTTTCCGCTGGTGACCACCAAGAAGTGTCATCTCAAGTCCATCATCCACGAGCTGCT 877 Query 196193 GTGGTTCCTGAACGGCGACACCAACATCCAGTATCTGAAAGACAACAACGTCAGTATCTG 196252 |||||| || | ||||| |||||||||| ||||||||| || ||| |||| ||||| Sbjct 878 GTGGTTTTTGCAGGGCGATACCAACATCCGGTATCTGAAGGAAAACGGCGTCTCCATCTG 937 Query 196253 GGATGAGTGGGCAGATGAAGATGGCGATCTTGGCCCCGTCTACGGTAAGCAGTGGCG 196309 ||| ||||||||||| || ||||||| || || || ||||| || | |||||||| Sbjct 938 GGACGAGTGGGCAGACGAGAATGGCGACCTGGGGCCGGTCTATGGCTATCAGTGGCG 994 >seq11470 Length=53368 Score = 91.5 bits (100), Expect = 2e-13 Identities = 147/207 (71%), Gaps = 6/207 (3%) Strand=Plus/Minus Query 196062 GAGAAAGCTGACCGTACCGGCACGGG--CACCATCTCTATTTTCGGGTATCAGATGCGTT 196119 || || | ||||||||| || || || ||| || ||||| || |||| ||||||| Sbjct 34892 GACAAGGGTGACCGTACAGGTACAGGTACACGTTCGGTATTT--GGTCATCAAATGCGTT 34835 Query 196120 TTGACCTGCGCAAAGGGTTCCCGCTGGTCACCACCAA-AAAGTTGCACCTGCGATCTATC 196178 |||| || ||||| || || | | ||||| || |||||| ||| | || || || Sbjct 34834 TTGATCTTTCTAAAGGTTTTCCATTACTAACCACTAAGAAAGTT-CACTTTCGTTCAATT 34776 Query 196179 ATCCACGAACTGTTGTGGTTCCTGAACGGCGACACCAACATCCAGTATCTGAAAGACAAC 196238 | || || | |||||||| || || || || ||| | || ||||| |||||||| Sbjct 34775 GTAATTGAGCTTCTTTGGTTCCTCAAAGGTGATACTAACGTTCAATATCTCAAAGACAAT 34716 Query 196239 AACGTCAGTATCTGGGATGAGTGGGCA 196265 || |||| ||| |||||||| |||||| Sbjct 34715 AAAGTCACTATTTGGGATGAATGGGCA 34689 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 768571736393760