Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_031242.1 Length=174307 Score E Sequences producing significant alignments: (Bits) Value seq71469 93.3 5e-14 seq5373 86.0 7e-12 seq7 86.0 7e-12 seq68 82.4 8e-11 >seq71469 Length=5065 Score = 93.3 bits (102), Expect = 5e-14 Identities = 65/73 (89%), Gaps = 1/73 (1%) Strand=Plus/Minus Query 18250 GGGGA-TTAGCTCAGTTGGTAGAGCACCTGCTTTGCAAGCAGGCTGTCAGGAGTTCGAGT 18308 ||||| |||||| |||||||||||| ||||||||||| ||||| ||||||||||||| | Sbjct 4986 GGGGACTTAGCTTAGTTGGTAGAGCGCCTGCTTTGCACGCAGGAGGTCAGGAGTTCGACT 4927 Query 18309 CTCCTATTCTCCA 18321 |||||| |||||| Sbjct 4926 CTCCTAGTCTCCA 4914 >seq5373 Length=95907 Score = 86.0 bits (94), Expect = 7e-12 Identities = 61/70 (87%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 159820 TATGGGTCAGTAGCTCAGTTGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCACAGGTTC 159879 |||| | | ||||||||||||||||||||| | ||||||||||| | |||||||||||| Sbjct 62161 TATGCGCCTGTAGCTCAGTTGGATAGAGCATCCGCCTTCTAAGCGGATGGTCACAGGTTC 62102 Query 159880 GAGTCCTGTC 159889 || ||||||| Sbjct 62101 GAATCCTGTC 62092 >seq7 Length=747525 Score = 86.0 bits (94), Expect = 7e-12 Identities = 61/70 (87%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 159820 TATGGGTCAGTAGCTCAGTTGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCACAGGTTC 159879 |||| | | ||||||||||||||||||||||| ||||||||||| || ||||| |||||| Sbjct 439921 TATGCGCCCGTAGCTCAGTTGGATAGAGCAACGGCCTTCTAAGCCGTGGGTCATAGGTTC 439862 Query 159880 GAGTCCTGTC 159889 || |||| || Sbjct 439861 GAATCCTATC 439852 >seq68 Length=444459 Score = 82.4 bits (90), Expect = 8e-11 Identities = 59/67 (88%), Gaps = 1/67 (1%) Strand=Plus/Plus Query 159823 GGGTCAGTAGCTCAGTTGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCACAGGTTCGAG 159882 ||| | ||||||||||||| ||||||||||| ||| ||| |||| |||||||||||||| Sbjct 414100 GGGCCCGTAGCTCAGTTGG-TAGAGCAACTGACTTTTAATCAGTGGGTCACAGGTTCGAA 414158 Query 159883 TCCTGTC 159889 ||||||| Sbjct 414159 TCCTGTC 414165 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556398032519520