Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_031251.1 Length=47880 Score E Sequences producing significant alignments: (Bits) Value seq1 105 2e-18 >seq1 Length=1655743 Score = 105 bits (116), Expect = 2e-18 Identities = 257/377 (68%), Gaps = 12/377 (3%) Strand=Plus/Minus Query 3465 CGGATCAACAGCCCGGGCGGCAACGTGTTCGACGGGATCGCGATCCTCAACGCGCT-ACG 3523 ||| | |||||||| |||||| || ||||||| | ||||||||| ||| ||| | | | Sbjct 161227 CGGCTGAACAGCCCCGGCGGCTCGGTCTTCGACGCGGTCGCGATCCACAATGCGATCAAG 161168 Query 3524 CGGTCACAAGGCCCACGTCACCACCATCGTCGACGGCCTCGCAGCGTCAGCAGCGAGCTT 3583 || ||| ||| | ||||| | ||||||| |||| || || || || || Sbjct 161167 CGC-CACGAGGGCACGGTCACGGTCTGGATCGACGGTATCGCCGCCTCGGCCGCCTCCTA 161109 Query 3584 CATCGCGATGGCCGGCGACGAGATCGTGATGAATCGCAACGCGGAGATGATGATTCACGA 3643 |||||||||||| |||||||||||||| ||| ||||| ||||||| ||||| Sbjct 161108 CATCGCGATGGCGGGCGACGAGATCGTCATGCCCGAGAACGCCTTCCTGATGATCCACGA 161049 Query 3644 CGCCTCCGGTGT-GTGCATCGGCAACGCCAAGGACATGGCCGAGATGCACGACATGCTCG 3702 | | ||||| | ||| || |||| ||| |||||||| || ||| ||| ||||| Sbjct 161048 CCCGTCCGGCCTCGTG-ATGGGCACGGCCGAGGACATGCGCGCCATGGCCGAGGCGCTCG 160990 Query 3703 AACGCGTCAGCAACAACATCGCCTCCATCTACGCCGACCGCA--CCGGAACCGACGCCGC 3760 | || | || | ||| |||| ||| |||| || | |||| | ||||||| Sbjct 160989 ACAAGGTGAAGGGCAGCCTCGTCTCCGGCTATGCCG--CGAAATCCGG-CCGGACGCCGG 160933 Query 3761 CGAATGGCGTACCGC-AATGCTCGCCGAGACCTGGTACTCCGCCGACGAGGCCGTCGACG 3819 | | | | ||| ||| |||||||||||||| | ||| || ||||||| || Sbjct 160932 AGGAGGTCTCCGCGCTCATGGCCGCCGAGACCTGGTTCGACGCATCGGACGCCGTCG-CG 160874 Query 3820 C-GGGCCTGGCCGACCG 3835 | |||| | ||||| || Sbjct 160873 CAGGGCTTCGCCGATCG 160857 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 152766731672944