Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq2234 140 7e-28 >seq2234 Length=154088 Score = 140 bits (154), Expect = 7e-28 Identities = 166/223 (74%), Gaps = 4/223 (2%) Strand=Plus/Minus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 || |||| ||| || || |||||||| || ||||||||||| |||||||| | | ||| Sbjct 10958 CTCAGTCGGAGAACCAGGTGAAGAGTGGATTCTTTTTGGATATTGTAATCTGAAAGAGTA 10899 Query 151944 CTCCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTC 152001 | |||||||| || ||||| || || ||||| ||||||||||| || | | ||| | Sbjct 10898 CGGCCATCTTCAAGCTGCTTT--CCAGCAAAGATCAGCCTCTGCTGATCTGGTGGGATAC 10841 Query 152002 CTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAA 152061 | || || |||||||| || || ||| | || | |||| | ||| ||||||| Sbjct 10840 CCTCTTTATCTTGAATCTTGGCCTTCACATTTTCGATTGTGTCACTAGGCTCCACTTCAA 10781 Query 152062 GAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 |||| || ||||| || || ||||||||||| |||| |||||| Sbjct 10780 GAGTGATGGTTTTTCCAGTCAGAGTCTTCACAAAGATCTGCAT 10738 Score = 122 bits (134), Expect = 2e-22 Identities = 153/209 (73%), Gaps = 1/209 (0%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| |||||||| || ||||| ||||| |||||||| | | ||| | |||||||| | Sbjct 11172 CAAG-TGAAGAGTGGATTCTTTCTGGATATTGTAATCAGACAGAGTACGACCATCTTCAA 11114 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | ||| ||||||||||| | ||||||||||| | | ||| ||||| || || || | Sbjct 11113 GCTGTTTTCCGGCGAAGATCAATCTCTGCTGGTCTGGAGGGATGCCTTCTTTATCCTGGA 11054 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 ||||| ||||||| | |||| |||| | || ||||| | || || || || | Sbjct 11053 TTTTTGTTTTGACATTTTCTATTGTGTCGCTAGGTTCAACTTCTAACGTTATGGTCTTCC 10994 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCATT 152105 | || |||||||| ||||| | |||||| Sbjct 10993 CTGTCAGAGTCTTTACGAATATTTGCATT 10965 Score = 114 bits (126), Expect = 3e-20 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 151889 TCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCC 151948 |||||| || ||||| || |||||||||||||||||||||||||| | | || | ||| Sbjct 12321 TCTGAGAACTAGATGGAGTGTAGACTCTTTTTGGATGTTGTAATCCGACAGGGTACGCCC 12262 Query 151949 ATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTT 152008 |||||| || ||| || || || || ||||| ||||| || | | || ||||| || Sbjct 12261 ATCTTCAAGCTGTTTACCAGCAAAAATCAGCCTTTGCTGATCTGGTGGAATGCCTTCTTT 12202 Query 152009 TTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAAT 152068 |||||||||||| ||||||| | || | | || |||||||| | || || Sbjct 12201 ATCTTGAATTTTTGTTTTGACATTTTCAATTGTATCGCTTGGTTCTACTTCTAAGGTGAT 12142 Query 152069 AGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || ||||| || || || || | ||||| Sbjct 12141 GGTCTTTCCAGTGAGGGTTTTAACAAAAATTTGCAT 12106 Score = 113 bits (124), Expect = 1e-19 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 151890 CTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCA 151949 || || || | ||| | ||||| |||||||||||||||||||| | | ||| | ||| Sbjct 11636 CTCAGAACTAAATGTAATGTAGATTCTTTTTGGATGTTGTAATCAGAAAGAGTACGACCA 11577 Query 151950 TCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTT 152009 ||||| | || || || || || |||||||| || || | | ||| ||||| || Sbjct 11576 TCTTCCAACTGCTTACCAGCAAAAATTAGCCTCTGTTGATCTGGGGGGATACCTTCTTTG 11517 Query 152010 TCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATA 152069 ||||||||||| |||||| | |||| |||| | ||||||||| | || || Sbjct 11516 TCTTGAATTTTGGCTTTGACGTTTTCTATTGTGTCACTAGGCTCTACTTCCAAGGTGATG 11457 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 |||||||| || || || |||||||| | ||||| Sbjct 11456 GTTTTGCCAGTTAGGGTTTTCACGAAAATTTGCAT 11422 Score = 109 bits (120), Expect = 1e-18 Identities = 142/195 (73%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| || | ||| ||||| ||||| || ||||| || ||||| || || | || |||| Sbjct 12636 GAGCCTCAAGACTAGATGCAGAGTTGATTCTTTCTGAATGTTATAGTCCGATAGGGTTCG 12577 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 |||||||| || ||| || |||||||| | ||||||||| || | | || ||||| Sbjct 12576 GCCATCTTCAAGTTGTTTACCTGCGAAGATTAACCTCTGCTGATCTGGAGGAATACCTTC 12517 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAG 152062 || ||||||||||| ||| ||| |||| | | | || ||| || |||||||| Sbjct 12516 TTTATCTTGAATTTTAGCTTTCACATTCTCAATGGTATC---ACTTGGTTCAACTTCAAG 12460 Query 152063 AGTAATAGTTTTGCC 152077 |||||| ||||| || Sbjct 12459 AGTAATGGTTTTACC 12445 Score = 104 bits (114), Expect = 5e-17 Identities = 158/223 (71%), Gaps = 4/223 (2%) Strand=Plus/Minus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 || ||||| | ||| | ||||| || || || |||||||||||||| || | | ||| Sbjct 11870 CTTAGTCTCAAGACCAAGTGAAGGGTTGATTCCTTTTGGATGTTGTAGTCCGACAGAGTA 11811 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 | ||||||||||| || || || ||||| | | || || || | | ||| ||| Sbjct 11810 CGTCCATCTTCTAGCTGCTTGCCCGCAAAGATTAATCGTTGTTGATCAGGAGGGATACCT 11751 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT--CTCTACTTCAA 152061 ||||| ||||||||||| ||||||| | || | ||| | | | ||| ||||| | Sbjct 11750 TCCTTATCTTGAATTTTAGCTTTGACATTTTCAA--TTGTATCACTTGGCTCAACTTCTA 11693 Query 152062 GAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | ||||| || || || || ||||| || ||||||| ||||| Sbjct 11692 GTGTAATTGTCTTCCCAGTAAGAGTTTTGACGAAGATTTGCAT 11650 Score = 104 bits (114), Expect = 5e-17 Identities = 158/224 (71%), Gaps = 6/224 (3%) Strand=Plus/Minus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 |||||||| | || ||||| |||||||| |||||||| ||||| ||||| | | ||| Sbjct 12098 CTGAGTCTTAAAACCAGATGCAGAGTAGATTCTTTTTGAATGTTATAATCCGACAGAGTA 12039 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 | ||||||||||| || || || || || | | |||||| || | | |||||| Sbjct 12038 CGGCCATCTTCTAGTTGCTTACCAGCAAAAATTAAACGCTGCTGATCTGGGGGAATTCCT 11979 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCA 152060 || || || || |||||| ||| ||| | || | | | || ||| || ||||| Sbjct 11978 TCTTTGTCCTGGATTTTTGCTTTAACATTTTCAATGGTATC---ACTTGGTTCGACTTCT 11922 Query 152061 AGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | ||||| ||||| || || |||||||| || || | ||||| Sbjct 11921 AATGTAATTGTTTTACCTGTTAGAGTCTTTACAAAAATTTGCAT 11878 Score = 84.2 bits (92), Expect = 5e-11 Identities = 111/154 (72%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 || || || | ||| ||||| |||||||| ||||| || |||||||| || | || ||| Sbjct 11414 CTAAGCCTCAAGACTAGATGTAGAGTAGATTCTTTCTGAATGTTGTAGTCCGATAGAGTA 11355 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 | ||||||||||| || || || || || | | ||| ||||| | | || ||| Sbjct 11354 CGGCCATCTTCTAGTTGCTTACCAGCAAAAATCAAACGCTGTTGGTCTGGGGGAATACCT 11295 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTA 152037 || || ||||| |||||| |||||| | |||| Sbjct 11294 TCTTTATCTTGGATTTTTGTCTTGACATTTTCTA 11261 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151156311914356