Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_031924.1 Length=47564 Score E Sequences producing significant alignments: (Bits) Value seq34866 118 3e-22 seq164795 89.7 2e-13 seq152 86.0 2e-12 seq50 86.0 2e-12 >seq34866 Length=13211 Score = 118 bits (130), Expect = 3e-22 Identities = 141/189 (75%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 36480 ACAATCTCTGTGGTGTATCTGTCTATTCCGTTGCTG-TCAGTCCATTTACGAGTACGAAG 36538 || || ||||| |||||| | ||| || | || |||||||||||||| || | | Sbjct 5648 ACGATTTCTGTAGTGTATTTTTCTTGGCC-TGATTGATCAGTCCATTTACGCGTTTGTAA 5706 Query 36539 CTGGCCTTCGATGTAAACCTGCGAACCTTTTCGAAGGTATTCTCCTGCAACTTCCGCAAG 36598 | ||||||||||| || || |||||||| ||||||||||| || |||||||| || || Sbjct 5707 ACGACCTTCGATGTACACTTGTGAACCTTTACGAAGGTATTCACCAGCAACTTCTGCTAG 5766 Query 36599 TTTCCCGAATATGACAATACGATGCCACTCTGTCTGTTCTTTCTTTTCTCCTGTCTGCTT 36658 ||| || |||| || | ||| ||||| || || | |||| | ||| ||||| | || Sbjct 5767 TTTGCCAAATAACACGACACGGTGCCATTCAGTACGCTCTTGCATTTGCCCTGTGTTTTT 5826 Query 36659 ATCTTTCCA 36667 ||||||||| Sbjct 5827 ATCTTTCCA 5835 >seq164795 Length=1075 Score = 89.7 bits (98), Expect = 2e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 36537 AGCTGGCCTTCGATGTAAACCTGCGAACCTTTTCGAAGGTATTCTCCTGCAACTTCCGCA 36596 |||| ||| |||||||| ||||||||||| || || |||||||| || || | || || Sbjct 402 AGCTTGCCCTCGATGTACACCTGCGAACCCTTGCGCAGGTATTCGCCGGCGATCTCGGCG 461 Query 36597 AGTTTCCCGAATATGACAATACGATGCCACTCTGTCTGTTCTTTCTTTTCTCCTGTCTGC 36656 | || ||||| | | ||| || |||||||| |||| || ||| | || |||||| Sbjct 462 ACCTTGCCGAACAGGGCAACGCGGTGCCACTCGGTCTTCTCGACCTTCTGACCGGTCTGC 521 Query 36657 TTATCTTTCCACTGCTC 36673 || || |||||||||| Sbjct 522 TTGTCGGTCCACTGCTC 538 >seq152 Length=367798 Score = 86.0 bits (94), Expect = 2e-12 Identities = 147/213 (69%), Gaps = 8/213 (4%) Strand=Plus/Minus Query 36482 AATCTCTGTGGTGTATCTGTCTATTCCGTTGCTGTCAGTCCATTTACGAGTACGAAGCTG 36541 ||| || ||| |||| | ||| || || ||| ||||||| || ||||| | Sbjct 236530 AATTTCGGTGCTGTAACGCTCTTGACCATTTTGGTCTGTCCATTGGCGCGTACGCAATGA 236471 Query 36542 GCCTTCGATGTAAACCTGCGAACCTTTTCGAAGGTATTCTCCTGCAACTTCCGCAAGTTT 36601 |||||||| ||||| | ||||||||| || | ||||| ||||| ||| | || Sbjct 236470 ACCTTCGATATAAACTTTCGAACCTTTACGTAAGTATTGCTGTGCAATTTCACCTAGA-- 236413 Query 36602 CCCGAATATG----ACAATACGATGCCACTCTGTCTGTTCTTTCTTTTCTCCTGTCTGCT 36657 || |||| || ||||||||||| ||||| |||||||| ||| ||||| | | Sbjct 236412 --CGGTTATGCAATACGATACGATGCCATTCTGTTTGTTCTTTTCGTTCGCCTGTATTTT 236355 Query 36658 TATCTTTCCACTGCTCAGATGTTGCAACGGAAA 36690 ||||| ||||| ||| |||||||| |||| Sbjct 236354 TATCTGTCCACGATTCACTTGTTGCAATCGAAA 236322 >seq50 Length=481860 Score = 86.0 bits (94), Expect = 2e-12 Identities = 144/206 (70%), Gaps = 2/206 (1%) Strand=Plus/Minus Query 36480 ACAATCTCTGTGGTGTATCTGTCTATTCCGTTGCTG-TCAGTCCATTTACGAGTACGAAG 36538 || || || |||||||| | |||| || |||||| || ||| ||||| || || Sbjct 154954 ACGATTTCGGTGGTGTAACGCTCTACGCC-TTGCTGATCCTGCCACTTACGGGTTTTCAG 154896 Query 36539 CTGGCCTTCGATGTAAACCTGCGAACCTTTTCGAAGGTATTCTCCTGCAACTTCCGCAAG 36598 || ||||||||| || |||| || ||||| || || ||||| || |||| ||| || || Sbjct 154895 CTTGCCTTCGATATACACCTTAGAGCCTTTACGCAGATATTCGCCGGCAATTTCTGCCAG 154836 Query 36599 TTTCCCGAATATGACAATACGATGCCACTCTGTCTGTTCTTTCTTTTCTCCTGTCTGCTT 36658 | | | || || | || ||||| || || || |||||| |||| || || || Sbjct 154835 ACGCTGGTAAATTACGACCCGGTGCCATTCGGTTTGCTCTTTCATTTCGCCGGTAGCTTT 154776 Query 36659 ATCTTTCCACTGCTCAGATGTTGCAA 36684 ||||||||| ||||| || |||| Sbjct 154775 ATCTTTCCAGCTTTCAGAGGTCGCAA 154750 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151757695946832