Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_031935.1 Length=186386 Score E Sequences producing significant alignments: (Bits) Value seq457 89.7 6e-13 seq71469 87.8 2e-12 seq4656 87.8 2e-12 >seq457 Length=273712 Score = 89.7 bits (98), Expect = 6e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 17705 GGGGTTGTAGCTCAGTCGGTTAGAGCGCCTGCCTGTCACGCAGGAAGTCGAGGGTTCAAG 17764 |||| ||||||||||| ||||||||||| ||||||||||||| || |||| | ||||||| Sbjct 153547 GGGGGTGTAGCTCAGTTGGTTAGAGCGCATGCCTGTCACGCATGAGGTCGTGAGTTCAAG 153606 Query 17765 TCCCTTCAGTCCCG 17778 || | ||| ||||| Sbjct 153607 TCTCATCACTCCCG 153620 >seq71469 Length=5065 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 17859 GGGGAATTAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCAGCGGTTCGAGT 17918 ||||| |||||| |||||||||||||||||||||||| |||||| ||||| |||||| | Sbjct 4986 GGGGACTTAGCTTAGTTGGTAGAGCGCCTGCTTTGCACGCAGGAGGTCAGGAGTTCGACT 4927 Query 17919 CCGCTATTCTCCA 17931 | ||| |||||| Sbjct 4926 CTCCTAGTCTCCA 4914 >seq4656 Length=104629 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/75 (87%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 17858 AGGGGAATTAGCTCAGTTGG-TAGAGCGCCTGCTTTGCAAGCAGGATGTCAGCGGTTCGA 17916 |||||||||||||||| ||| |||||| ||||| ||||| ||||| |||| |||||||| Sbjct 93668 AGGGGAATTAGCTCAGCTGGCTAGAGCACCTGCCTTGCACGCAGGGGGTCAACGGTTCGA 93609 Query 17917 GTCCGCTATTCTCCA 17931 |||| ||||||||| Sbjct 93608 ATCCGTTATTCTCCA 93594 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 594963749693760