Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq2234 165 2e-35 seq32926 100 7e-16 >seq2234 Length=154088 Score = 165 bits (182), Expect = 2e-35 Identities = 176/230 (77%), Gaps = 7/230 (3%) Strand=Plus/Plus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| | ||||| |||||||||||||| || || || ||||| || ||||| | Sbjct 10507 AAAATGC---AGATTTTTGTGAAAACTCTCACCGGCAAGACCATCACTCTAGAGGTTG-- 10561 Query 177975 AGCTCA--GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTC 178032 ||| | || ||||| || || || || ||||||||||||||||||||||| |||| Sbjct 10562 AGCCTAGTGATACCATTGAAAATGTAAAGGCCAAGATTCAGGACAAAGAAGGAATTCCTC 10621 Query 178033 CGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCG 178092 | || || |||||| | ||||| || |||||||| | ||||||||||| || || | | Sbjct 10622 CAGATCAACAACGATTGATCTTTGCTGGAAAACAATTGGAAGATGGAAGAACCCTCTCGG 10681 Query 178093 ATTATAACGTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 | || ||| | ||||| ||||| ||||| ||||| ||| | || |||||| Sbjct 10682 ACTACAACATTCAAAAGGAATCCACACTTCATCTAGTTCTCAGGCTCAGA 10731 Score = 154 bits (170), Expect = 4e-32 Identities = 168/222 (76%), Gaps = 6/222 (3%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA---AGCTCA 177980 ||||| ||||| || ||||| ||||| || || || || | || || ||| ||| Sbjct 10969 CAAATATTCGTAAAGACTCTGACAGGGAAGACCATAACGTTAGAAGTTGAACCTAGC--- 11025 Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040 ||||| || || || |||||| ||| || ||||| |||||||| |||||||| |||||| Sbjct 11026 GACACAATAGAAAATGTCAAAACAAAAATCCAGGATAAAGAAGGCATCCCTCCAGACCAG 11085 Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100 || || | |||||||||||||||||||| |||||||| | ||||| | ||||| || Sbjct 11086 CAGAGATTGATCTTCGCCGGAAAACAGCTTGAAGATGGTCGTACTCTGTCTGATTACAAT 11145 Query 178101 GTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||| |||||||| || || || | ||| || |||| ||| Sbjct 11146 ATCCAGAAAGAATCCACTCTTCACTTGGTTCTGCGACTTAGA 11187 Score = 152 bits (168), Expect = 1e-31 Identities = 165/219 (75%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || || ||||| ||||| ||||| || || | || || ||| || Sbjct 11881 CAAATTTTTGTAAAGACTCTAACAGGTAAAACAATTACATTAGAAGTCGAACCAAGTGAT 11940 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || || ||| ||| || ||||||||||||||||| || || || ||||| Sbjct 11941 ACCATTGAAAATGTTAAAGCAAAAATCCAGGACAAAGAAGGAATTCCCCCAGATCAGCAG 12000 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || || || || || || || |||||||| | ||||| | ||||||||| | Sbjct 12001 CGTTTAATTTTTGCTGGTAAGCAACTAGAAGATGGCCGTACTCTGTCGGATTATAACATT 12060 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 ||||||||||| || |||||||| ||||| ||||||||| Sbjct 12061 CAAAAAGAATCTACTCTGCATCTGGTTTTAAGACTCAGA 12099 Score = 147 bits (162), Expect = 5e-30 Identities = 162/214 (76%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981 ||||||||||||||||| || || || ||||| |||||| | || || | ||| | | Sbjct 11425 CAAATTTTCGTGAAAACCCTAACTGGCAAAACCATCACCTTGGAAGT--AGAGCCTAGTG 11482 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 |||| || || ||||||||| || ||||| ||||||||||| ||||| || || || | Sbjct 11483 ACACAATAGAAAACGTCAAAGCCAAAATTCAAGACAAAGAAGGTATCCCCCCAGATCAAC 11542 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || || || || || || ||| | |||||||| | |||||| | ||||| ||| Sbjct 11543 AGAGGCTAATTTTTGCTGGTAAGCAGTTGGAAGATGGTCGTACTCTTTCTGATTACAACA 11602 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAG 178135 ||||||||||||| ||| | ||| | ||| |||| Sbjct 11603 TCCAAAAAGAATCTACATTACATTTAGTTCTGAG 11636 Score = 141 bits (156), Expect = 2e-28 Identities = 165/221 (75%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || ||||| ||||| || |||||||| ||||| || || ||||| || || Sbjct 10741 CAGATCTTTGTGAAGACTCTGACTGGAAAAACCATCACTCTTGAAGTGGA--GCCTAGTG 10798 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 |||| ||||| || || || |||||||| || ||||| || ||||| || || |||| Sbjct 10799 ACACAATCGAAAATGTGAAGGCCAAGATTCAAGATAAAGAGGGTATCCCACCAGATCAGC 10858 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| || ||||| ||||| |||||||| | |||||| | ||||| || Sbjct 10859 AGAGGCTGATCTTTGCTGGAAAGCAGCTTGAAGATGGCCGTACTCTTTCAGATTACAATA 10918 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 ||||||||||||| || || || || ||| | |||| ||| Sbjct 10919 TCCAAAAAGAATCCACTCTTCACCTGGTTCTCCGACTGAGA 10959 Score = 120 bits (132), Expect = 7e-22 Identities = 144/196 (73%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 177947 AGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAAAA 178006 ||| ||||| || || || || || ||| || ||||| ||||| || ||| || Sbjct 12444 AGGTAAAACCATTACTCTTGAAGTTGAACCAAGTGATACCATTGAGAATGTGAAAGCTAA 12503 Query 178007 GATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACA 178066 ||||| || |||||||| || ||||| || ||||| | | |||||||| || ||||| Sbjct 12504 AATTCAAGATAAAGAAGGTATTCCTCCAGATCAGCAGAGGTTAATCTTCGCAGGTAAACA 12563 Query 178067 GCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCT 178126 || |||||||| | || || | || |||||| | || ||||||||||| |||||||| Sbjct 12564 ACTTGAAGATGGCCGAACCCTATCGGACTATAACATTCAGAAAGAATCAACTCTGCATCT 12623 Query 178127 TGTTTTGAGACTCAGA 178142 || ||||| ||| || Sbjct 12624 AGTCTTGAGGCTCCGA 12639 Score = 114 bits (126), Expect = 3e-20 Identities = 143/194 (74%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 177947 AGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG--ACACCATCGAGAACGTCAAACAA 178004 ||||||||| || || || || || || || ||| | || || || ||||| ||| | Sbjct 13264 AGGAAAAACAATTACACTAGAAGTCGA--GCCCAGTGATACTATTGAAAACGTTAAAGCA 13321 Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064 ||||| || ||||| |||||||| || || || || ||||| || ||||| || || ||| Sbjct 13322 AAGATCCAAGACAAGGAAGGAATACCACCAGATCAACAACGTCTCATCTTTGCTGGTAAA 13381 Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124 ||| | ||||||||||| || || | || ||||| | || || || || || || || Sbjct 13382 CAGTTGGAAGATGGAAGAACCCTGTCTGACTATAATATTCAGAAGGAGTCTACTCTACAC 13441 Query 178125 CTTGTTTTGAGACT 178138 | ||||||||||| Sbjct 13442 TTGGTTTTGAGACT 13455 >seq32926 Length=14205 Score = 100 bits (110), Expect = 7e-16 Identities = 153/217 (71%), Gaps = 11/217 (5%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981 || || ||||| |||||||| ||||||||||| || || || || || | ||| || | Sbjct 14110 CAGATATTCGTCAAAACTCTAACAGGAAAAACAATTACACTAGAAGTCG--AGCCCAGTG 14053 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 | | || || ||||| ||| |||||| || ||||| |||||||| || || || || | Sbjct 14052 ATGCTATTGAAAACGTTAAAGCAAAGATCCAAGACAAGGAAGGAATACCACCAGATCAAC 13993 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 |||| || || || || | | | ||||||||||| || || | || ||||| Sbjct 13992 AACGTCTCATTTTTGCTG-------GTTGGAAGATGGAAGAACCCTGTCTGACTATAATA 13940 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 | || || || || || | || | ||||||||||| Sbjct 13939 TTCAGAAGGAGTCTACTGTACACTTGGTTTTGAGACT 13903 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1200951455137784