Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neruda_20aoede_20[genbank_20GCA_5F900068225.1_202017-04-25] 355,741 sequences; 337,370,441 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq7548 540 1e-148 seq139650 100 3e-16 seq52122 86.0 7e-12 >seq7548 Length=2633 Score = 540 bits (598), Expect = 1e-148 Identities = 1212/1799 (67%), Gaps = 45/1799 (3%) Strand=Plus/Minus Query 52790 ATTTTATCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAG 52849 |||||| | ||||| | ||||| || || | | | ||| ||||| || |||| ||| Sbjct 2257 ATTTTACCTTTGTCTACGGTGAACTGTATAGCATTTGCTGCCGGTTTTGTGCGTAAGTAG 2198 Query 52850 TACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTGGAA 52909 |||||||| ||||||| || | |||| ||| ||||| || |||||||| | Sbjct 2197 TACATTCCTGTTTTTAAGCCCATTTTCCAAGCGTGGAAATGAATCGACGTTAGTTTCCCA 2138 Query 52910 TAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTG 52969 || | || | || | ||| || || | |||||||||||| || ||||| ||||| || Sbjct 2137 TAGTTAGGCTTAGCAACATGTATGTTAAAAGATTGACTTTGGTCTATGAAAGCTCCTCTA 2078 Query 52970 TCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACTCG 53028 || || ||||||| |||| ||| || || ||| ||||| | ||||| || || || Sbjct 2077 TCAGCCGCCATTTGTATGGACGTTTTCAATGAAATCTCCCATACGGTTTTGTACAAATCT 2018 Query 53029 CTTAATATCTTCTGGAAGGTTTGTA--TTCT-GAATAGATCCACCATCTACCATAATCCT 53085 |||| | |||| |||| ||| | |||| | |||||||| | | ||| Sbjct 2017 CTTATT-TCTTTAGGAATTTTTTCAATTTCTTGTATAGATCCGTTGTTGTATAAAATAAG 1959 Query 53086 ATTCTTGATCTCATCATTCCATAATTTT-CTCTCGGTTAAAACTCTAAGGAGATGCGGAT 53144 ||| || || || |||| |||||| | |||| ||| ||| || | || || || ||| Sbjct 1958 ATTTTTCATATCTTCATCCCATAAATCGGCTCT-GGTCAAATCTGTCAGAAGGTGATGAT 1900 Query 53145 TAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTT 53204 | ||||| ||||||||||||| || ||||| | |||||| || ||| | |||| Sbjct 1899 TCACTACAGGAAATTCTCCAGATAAGACTCTTCTTTGGTAAATGTTTGATGTAAAGGGTT 1840 Query 53205 CCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCA 53264 | | ||||||| | || || | |||||| || || || || || |||||||| || | || Sbjct 1839 CAAAAGACTCAGTGTTACCAAGAATTTGTGCTGTAGAGGCGGTTGGCATAGGAGCTAACA 1780 Query 53265 ATAAACTATTTCTAAGACCGTATGTTCTG--ATTTTATCTTTTAGAGGTTCCCAATTCCA 53322 ||| | ||| | | ||| ||||| || ||||| ||||| || | |||| | ||| Sbjct 1779 ATAGAGAATTGCGCAAACC--ATGTTTTGCTATTTTTTCTTTGAGGGCAGCCCAGTCCCA 1722 Query 53323 AAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGC-GTACG 53381 || |||| || |||||| ||||| | || | | || Sbjct 1721 CAGTTCCGTAGGAGTTTTGTCCCACATATCATATTGTAGGATACCTTGGCTCACTGGACT 1662 Query 53382 ATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATG 53441 ||| |||| ||| ||||| ||||| || || |||| ||||||||| || ||||||| Sbjct 1661 C-CCTTCATAAGTACTGTATGCACCTTCTTTTTCTGCTAATTCACAACTAGCTTCTAATG 1603 Query 53442 CACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAA 53501 |||| |||||||| ||||| || || | | ||| || | ||||| | || || Sbjct 1602 CACCATAATAAATAGTTTCAAATATTTGTTGATTAAGGAGTATTGCTTTCTCACTTTCGT 1543 Query 53502 ATGGATAATTTAAGAGA-ATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGT 53560 | || || | | | | | ||| | ||||| | ||| |||||||||||||||||||| Sbjct 1542 AAGG-TATTCTCATCAACACAAATGTATCTGCCATTCCCTGAACACCAATACCGATAGGC 1484 Query 53561 CTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATT 53620 | || || |||| || ||| ||||| || | ||||||| | |||| ||| || | | Sbjct 1483 CGGTGCTTCATATTTGAAGTTTTTGCTTCAGGGACAGGATAAAAGTTAACATCAATGACT 1424 Query 53621 TTATTGAGGTTTC---TGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAAT 53677 || || | ||| |||||||| | ||| || || | ||| ||||| |||| Sbjct 1423 TTGTTTAAATTTTGAGTGACAATTTTTGTGATT---TCTTTTAATTTTTTAAAATTAAAT 1367 Query 53678 TGTCCATCTATTACAAACATGTTCAATGCAATAGATGCCAGATTACAAACGGCTACCTCA 53737 || || | ||||||||||| | ||| || || || ||||| || || || || ||| Sbjct 1366 TGCTTATGTTCAACAAACATGTTAAGTGCTATGGAAGCAAGATTGCATACTGCCACTTCA 1307 Query 53738 TTAGCATCCGCA---TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCT 53794 | | || | | ||||| | | ||||||||||||||| ||||| || || || || Sbjct 1306 T---CTTCTGAAGTGTATTGCACAACCTCAGTGCAAAGATTGCTACATTTAATAGTGCCA 1250 Query 53795 AAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCA 53854 | ||| | |||||||||||| ||||||| ||||||||||| | ||| |||| |||||| Sbjct 1249 AGATTCTTTTGATTACTCTTCCTGTTACAAGCATCCTTATACAACATGTATGGTGTACCA 1190 Query 53855 GTTTCAATCTGGGATTCTATAATCGCTTTCCAGACGACACGAGCCTTTATTATAGATTTG 53914 || || | |||| ||||||||| | ||||| | | |||| | | | | ||| Sbjct 1189 GTCTCCACTTGGGCTTCTATAATTGACTTCCATAACTCTTGAGCTCTGACTT--GTTTTA 1132 Query 53915 TATCTC--TTTTCTCTTTCGTATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACAT 53972 || || |||||| |||| ||| | ||| | | ||||||||| ||||| | | Sbjct 1131 TAAATCGTTTTTCTTTTTCATATTTGGCATATAGTTCTTCAAACTCCTCTCCATAGCAGT 1072 Query 53973 TGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTC---A 54029 | | |||||||| |||| |||||||| | ||| || |||||||| | Sbjct 1071 CAGCGAGACCAGGACAGTCATGAGGACACATTAGACTCCAAACT---TCATCCTTTTCTA 1015 Query 54030 CTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTT 54089 ||| ||||||||| ||||| || ||||| | ||| ||| || ||||| | ||| || Sbjct 1014 CTCTTTTCATAAACAGATCTGGTATCCATAAAGCATAAAACAGTTCTCTAGCTCTCATTT 955 Query 54090 CCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTT 54149 | || || ||||| ||||| | | ||| | |||| | | || || | |||||| || | Sbjct 954 CTTCCTTACCTGTGTTCTTCCTTAAATCTAAGAACTCAAATATGTCTGCATGCCAAGGCT 895 Query 54150 CCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGG 54209 | ||||| || | | | || || ||||||||||| || ||||||| ||||| || | Sbjct 894 CTAAGTAAATTGCAAATGCACCGGGACGTTTGTTTCCACCTTGATCTACATATCTGGCAG 835 Query 54210 TGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGA 54269 | || ||||| |||||||||||||| | | |||||| || | ||||| || || | | Sbjct 834 TATTGTTATACACTCTCAACATTGGCACTAGACCATTTGAGACCCCATTAGTGCCAGCTA 775 Query 54270 TATAGCTTCCACTGGCACGAAT---ATTACTAATTGATAGACCTATCCCCCCTGCCATTT 54326 |||| || ||| | || || || || || |||||| || || || || Sbjct 774 TATAAGAACCCTGGGCTCTGATGCAATGTGTA--TG-TAAACCTATGCCACCAGCAGATT 718 Query 54327 TAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCA 54386 |||| ||||| || ||| ||||||| |||||| | ||||| || || ||||| || ||| Sbjct 717 TAGAAATTAAAGCACATTGTTTTAAAGTATCAAAAATGCCTTCAATGCTATCGTCTTTCA 658 Query 54387 TGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAG 54446 | | || || ||| || | || | || || | || || | |||| Sbjct 657 TAGCTATAAGGAAGCAGGAGGAAAGCTGTGGCCGCGGTGTAGCTGCTGAGAACAGTGTAG 598 Query 54447 GAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTA 54506 | || || ||||| |||| || || | | ||| || || | ||| || || | Sbjct 597 GGCTTGCATGTGTAAAATATTTCTCTGACATCATATTATAAGTATTGATTGCACTATCAA 538 Query 54507 TATC-CCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAAC 54564 | || || | ||||| |||| | ||| | ||||| |||||| |||||||||||||| Sbjct 537 TGTCTTCACCG-TGAATGCCTATGGAGACTCTCATTAGCATGTGTTGAGGTCTTTCAAC 480 Score = 93.3 bits (102), Expect = 5e-14 Identities = 87/111 (78%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 54568 CTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA 54627 ||| |||||||| || | ||| || ||| ||||||||||||| ||||||||||||||||| Sbjct 210 CTTATTGTTTATCTTTAACAAATATGATCTTTCCAAAGTTTTGAAACCAAAATAGTTGTA 151 Query 54628 TGAAAAGTCTCGTTCGTAAATAATAACTGAGTTGAGTTTATCCTTATAttt 54678 | ||| |||| || |||| ||| | |||| | ||| ||||| | ||| Sbjct 150 TTTAAAATCTCTGTCATAAACAATGGCAGAGTCCAATTTGTCCTTGTTTTT 100 >seq139650 Length=2376 Score = 100 bits (110), Expect = 3e-16 Identities = 245/369 (66%), Gaps = 7/369 (2%) Strand=Plus/Minus Query 147329 TTATGACTCCA--ATTAATCCCATGTTAGCGGAATCGTGTGATTCTGTCAATAAGGCATT 147386 ||||||||||| |||| || |||||||| ||| | || | || || | | ||| | Sbjct 489 TTATGACTCCAGTATTA--CCTATGTTAGCTGAAGCTTGCAAGTCGGTTGAAATGGCTAT 432 Query 147387 TAAAAAATTTCCATCAGGAATGTTTGCTGAAGTCAAATACGATGGCGAGAGAGTACAAGT 147446 ||||||| |||| || |||||| ||||| | ||||| ||||| || | || ||||| Sbjct 431 GAAAAAATGTCCAAATGGCATGTTTTCTGAAATAAAATATGATGGAGAACGGGTTCAAGT 372 Query 147447 TCATAAAAATAATAACGAGTTTGCCTTTTTTAGTAGAAACATGAAACCAGTACTCTCTTA 147506 |||||||| || ||||| | |||| | | | ||||||||| | || | Sbjct 371 CCATAAAAAGGGAAATGAGTTCAAATATTTTTCCCGTGCCTTAAAACCAGTAATGGCTCA 312 Query 147507 TAAAGTGGATTATCTCAAAGAATACATACCGAAAGCATTTAAAAAAGCTACGTCTATCGT 147566 ||||| | || | ||||| || |||| || |||||| |||| | | | Sbjct 311 CAAAGTTAGTCATTTTAAAGATTATTTACCTAAGGCATTTCCTAAAGGAGATGATTTGAT 252 Query 147567 ATTGGATTCTGAAATTGTTCTTGTAGACGAACATAATGTACAGC---TCCCGTTTGGAAG 147623 |||||| ||||| | || | ||||| | ||| || | ||| | || ||||| | Sbjct 251 TTTGGATGCTGAAGTACTTATGGTAGATGTCAATACTGGAAAGCCATTGCCTTTTGGTAC 192 Query 147624 TTTAGGTATACACAAAAAGAAAGAATATAAAAACTCTAACATGTGTTTGTTTGTGTTTGA 147683 |||||||| |||||| | ||||| |||| | || | | ||||| | | | ||||| Sbjct 191 ATTAGGTATCCACAAACAATCAGAATTTAAAGATGCTCAAGTTTGTTTATATATATTTGA 132 Query 147684 CTGTTTGTA 147692 || || || Sbjct 131 TTGCTTATA 123 >seq52122 Length=5755 Score = 86.0 bits (94), Expect = 7e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 24621 TTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTC 24680 ||||||| || |||||||| | |||||||| ||||| || || ||||||||||| | | Sbjct 5436 TTAGATAAGTCTACTTCTTCTGCAGTCCAAAAGGATGCTTCAGCTTTTTTATACATCTGC 5377 Query 24681 CAGATGTCATGATATTGAATTGGAAAAATAACAAA 24715 || ||||| ||||||| ||||| || ||||| || Sbjct 5376 CAAATGTCTGGATATTGGATTGGGAATATAACGAA 5342 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 591081461053680