Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neruda_20aoede_20[genbank_20GCA_5F900068225.1_202017-04-25] 355,741 sequences; 337,370,441 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq121238 206 2e-48 seq55701 102 7e-17 seq110695 84.2 2e-11 seq110694 84.2 2e-11 >seq121238 Length=2101 Score = 206 bits (228), Expect = 2e-48 Identities = 534/802 (67%), Gaps = 25/802 (3%) Strand=Plus/Plus Query 105613 ACGCCGGTCCAGCCGCGGCCGTACATGGCGACGCCCACAATTATTTTGTTGGGATCGACG 105672 || || ||||| || || || |||||||| || || || | || || || |||| || Sbjct 489 ACTCCAGTCCAACCACGACCATACATGGCAACACCTACTACAATCTTCTTAGGATTCACT 548 Query 105673 CCTTGTTTCAGTAACGCATCGACAGCGTAGTGTGTAGTGTATAGCTCTTCCGAGTTCCAA 105732 || ||| | || | || || ||| | |||||| || | | |||||| Sbjct 549 CCCTGTGCTAACAAGTATTTTACTCCGAAGTCAGAAGTGTAAGTTTCCTTGGGGTTCCAT 608 Query 105733 CTTGGCGCGTAGACTGTTGTTTGGTAGCCCAA----ATCCGTGTTTGACCAAGCCCCTTT 105788 |||||||| | || |||||| | | |||| ||| |||||||| || ||||| Sbjct 609 GCAGGCGCGTACAATGGTGTTTGAT-GTCCAAGAGTATCA---TTTGACCAGGCACCTTT 664 Query 105789 AAAATCGTAACTCATGAG--AAATATTTTGCCTAATGACTTTTGCGCTTCGGCGTAGTTT 105846 || ||||||||||| | |||||| | | || | ||||| || | | ||||| Sbjct 665 GAAGTCGTAACTCATCAAGAAAATATGATCCATAT--AATTTTGAGCCTTGCTGTAGTCA 722 Query 105847 ACCACGGCAATCTTGTCGTAACCCGCGCTTATAGCGCTTGTTAATTCGTAAACCCTGCCG 105906 || || || || || | || ||||| ||||| ||||||||||| | | || Sbjct 723 ACAACTTGGATTTTATCCCACCCAGCGCTAATAGCAGAAGTTAATTCGTATTTCTTACCA 782 Query 105907 GTTTGCGCTTCGAGGTCGTCTAGCATTGCGCGCAGCTCCTCCAACAACAAAATGTATGTT 105966 | | ||| ||| || || ||||| | || | || | || ||| | || Sbjct 783 TTCTTAGCTGAGAGTTCATCGAGCATCTCACGTAATTCTTTCATCAAACTTACATAACAA 842 Query 105967 TTGGCGTCACCGTCCGCATCGCCCAACGAC-GGGTTAGCCCCTTTGCCGCCCGGAAACTC 106025 | | || | || | | | ||||| | | |||||||| |||||||| || || ||||| Sbjct 843 T---CACCATCTTCTGGA-CTCCCAAGGTCAGGGTTAGCGCCTTTGCCACCAGGGAACTC 898 Query 106026 CCAATCGATGTCTACACCGTCAAAGAATTTCCACACTTGCAGAAATTCCTTAACCGAATC 106085 ||||||||| || ||||| || ||||||||||| | ||||| ||||| || || | Sbjct 899 CCAATCGATATCAACACCATCGAAGAATTTCCATGTTAAAAGAAACTCCTTGACTGACTG 958 Query 106086 TACAAAAACGT-TTCTTTT---TTCAACATCGTGCATAAAATAAAATGGGTCTGATAGAG 106141 ||||| ||| |||| || || || || | ||| | ||||| || | || | Sbjct 959 CACAAAT-CGTGTTCTCTTAGATTTGTCAACG---AAAAAGAAGAATGGATCAGCAAGCG 1014 Query 106142 TCCAGCCTCCTATTGAAGGAAGAATTTTTAAATGGGGGTTTGCTAATTTTGCCGCCATCA 106201 |||| || || || || |||||||| || |||| ||| ||| ||| | ||||| Sbjct 1015 TCCACCCACCAATAGAGGGAAGAATCTTCAAATCGGGTCGGGCTTGTTTGAGAGACATCA 1074 Query 106202 ACTGTCCAAAATTGCCTTTATACGGCTCGTTCCAAGCGGACACACCTTTTTGGGGTTTTT 106261 | || |||||||||||||| || || || ||||| | |||| ||| |||| ||||||| Sbjct 1075 ATTGGCCAAAATTGCCTTTGTAGGGTTCATTCCATGAAGACAATCCTCTTTGTGGTTTTT 1134 Query 106262 GTACGGCGGCCCACGGATCGTGAATGGCAACTTTGAAATCTTCGCGTCCCTTGCACGATC 106321 ||| || ||||| ||||| || || | ||||||||||| ||||| || | || |||| Sbjct 1135 GTAATGCTGCCCATGGATCATGGATTGAGACTTTGAAATCCTCGCGGCCGCTACAAGATC 1194 Query 106322 TTTGCAAAGATTCAAAGCTTCCGGGTATCGTTTTGAGGGCGTCGTTTATTCCATCGCCGC 106381 || || | || || || || ||| ||| | | ||| || || || || |||| Sbjct 1195 GCTGTAATGCTTGGAAACTGCCTTCGATCTCTTTTAAGCTGTCATTGATACCGTCACCGC 1254 Query 106382 CGCAGATGGGTATGAAACCATA 106403 |||| || || ||||| || || Sbjct 1255 CGCAAATTGGAATGAAGCCGTA 1276 >seq55701 Length=1651 Score = 102 bits (112), Expect = 7e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 ||||||||| || | || ||| | || ||||| || ||||| ||| |||| | | Sbjct 297 AATGCAAATTTTTGTAAAGACACTTACAGGCAAGACTATTACTTTGGAAGTGGAAGCTTC 238 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 || || | | || ||||| |||||| |||||||| || | ||| |||||| Sbjct 237 TGATACAATTGAAAATGTTAAGGCGAAAATTCAGGATAAAGAGGGCATTCCCCCAGATCA 178 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140 ||||||||||| ||||| || || || || |||||| ||| | | || ||||| Sbjct 177 GCAAAGACTTATTTTTGCTGGAAAGCAGCTTGAAGATGGACGCACTCTATCTGACTACAA 118 Query 29141 TATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGGG 29189 ||||||||| ||||||||| | ||| |||| |||| | |||| ||| Sbjct 117 TATTCAGAAAGAATCTACTTTGCACCTGGTACTACGTCTGAGAGGTGGG 69 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| ||| | ||||| || || || |||||||| || ||| |||| | | Sbjct 524 ATGCAAATCTTCGTAAAAACCTTAACCGGGAAAACCATCACATTGGAAGTGGAAGCTTCT 465 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | | ||| ||| ||| || ||||| || | || ||||||| Sbjct 464 GATACAATCGAGAACGTAAAGGCAAAGATTCAGGACAAAGAGGGCATTCCTCCAGATCAA 405 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 |||||||| || || || || || ||||| |||||| || || | || || ||| Sbjct 404 CAAAGACTAATTTTCGCCGGAAAGCAACTAGAAGATGGGCGTACATTGTCAGACTATAAT 345 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTG 29171 |||||||||||||| ||| | ||| | ||| Sbjct 344 ATTCAGAAGGAATCAACTTTGCACTTAGTG 315 >seq110695 Length=218 Score = 84.2 bits (92), Expect = 2e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 29075 AGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGA 29134 ||||||||||||||| || ||||| || || |||||||||||| || || |||| Sbjct 210 AGATCAACAAAGACTGATTTTTGCTGGAAAGCAACTGGAAGATGGGCGCACATTGTCCGA 151 Query 29135 TTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 || ||||| ||||||||||| ||| | ||| | ||||| || || |||| || Sbjct 150 CTATAATATCCAGAAGGAATCAACTTTGCACTTAGTGTTGCGTCTAAGAGGTGG 97 >seq110694 Length=236 Score = 84.2 bits (92), Expect = 2e-11 Identities = 111/154 (72%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 29035 ATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCT 29094 || ||||| ||| ||| || ||||||||| | || ||| ||||| || || || | Sbjct 208 ATGTTAAGGCAAAGATTCAGGACAAAGAAGGTATTCCTCCAGACCAACAGAGGCTGATTT 149 Query 29095 TTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAAT 29154 |||| || || ||||| |||||| | || || | || || ||||| |||||||||| Sbjct 148 TTGCTGGAAAGCAACTCGAAGATGGCCGCACATTGTCTGACTATAATATCCAGAAGGAAT 89 Query 29155 CTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 | ||| | ||| | ||||| || ||| |||| || Sbjct 88 CAACTTTGCACTTAGTGTTGCGTTTAAGAGGTGG 55 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426478909249355