Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neruda_20aoede_20[genbank_20GCA_5F900068225.1_202017-04-25] 355,741 sequences; 337,370,441 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq32923 219 4e-52 seq121238 183 3e-41 seq2515 98.7 8e-16 seq125169 84.2 2e-11 >seq32923 Length=5192 Score = 219 bits (242), Expect = 4e-52 Identities = 357/518 (69%), Gaps = 57/518 (11%) Strand=Plus/Plus Query 29024 CACGCCTCAGTCATCACCCGCTGCACAAAGTCGCGGCCCTTGACGAGCAGCACGTACTCG 29083 |||||||| || |||||| ||| ||| | || ||||||||||| ||| | ||||| || Sbjct 1497 CACGCCTCTGTGATCACCTTCTGGACATACTCTCGGCCCTTGACCAGCTGAACGTAGGCG 1556 Query 29084 CAGCGGTCGTACCAGCGGGCGTGTTGCTGCCACGGCGCGTCGTCGGGTTCCCAATCCTTC 29143 || |||||| ||||||| ||||| |||| ||||||| |||||||| ||||| ||||| Sbjct 1557 CACCGGTCGAACCAGCGCGCGTGCTGCTCCCACGGCACGTCGTCGTTCTCCCAGTCCTTG 1616 Query 29144 AGACCGCCGTCGCAGCAAAAGCACCGCGTCTTGTCGCCCTGGCCAGTGTAAAAGAATCCG 29203 || |||||||| ||| | |||||| || |||||||||||||| ||||| |||||||| Sbjct 1617 AGGCCGCCGTCACAGTAGAAGCACTTAGTTTTGTCGCCCTGGCCGGTGTAGAAGAATCCC 1676 Query 29204 GCCTCGGCCAACTCTTCGGGCCGCTGTTTCAACCCGCGGGGCCACTCCGCAAAGGTGCGC 29263 || ||||| | || |||||| ||| ||||| | ||| ||||| || ||| |||| Sbjct 1677 GCTTCGGCGAGTTCCTCGGGCTTCTGCTTCAAACTGCGAGGCCAGTCGCTGAAGCTGCGG 1736 Query 29264 AAACGCGCGGCTTCCGTGGCATACTGCGGGTGCGC--GGCC-------------GCCGAC 29308 | || || || || | | | || |||||||| | |||| || | Sbjct 1737 AGGCGAGCCGCCTCGGAGTCGTAGCGCGGGTGCACAGGGCCGGGCATGCGGGGAGCGGGG 1796 Query 29309 CGCGCCGGCG-GGGCGCG-----------GTCGT-GTGGC-----------GTGTCGTGC 29344 ||| |||| ||||||| |||| | ||| | ||| || Sbjct 1797 GGCGTAGGCGCGGGCGCGCGCACGCCGCACTCGTCGCGGCCGACGGGCGCAGACTCGCGC 1856 Query 29345 G---CGTTG-----TT----------GCGCACAAACGGACACTGCGGCGCCCACCGCTTG 29386 | ||||| || |||| ||| || ||||| ||||||||||||| | Sbjct 1857 GGCACGTTGCCGGATTCCGGCTGCCGCCGCAGAAAGGGGCACTGGGGCGCCCACCGCTGG 1916 Query 29387 TGGTCCGTTTCCGGGTCGTCGCCCCTTACCCAATTCGTAATCTCTACCTTGCAAAACGCG 29446 |||||| | || ||||||||| ||||| ||| ||| ||||| || ||||||||| Sbjct 1917 TGGTCCTGGGCGGGATCGTCGCCCGCAACCCATTTCATAAGTTCTACTTTACAAAACGCG 1976 Query 29447 CAGCGCACCTCGTCGCCGCGGCCCAAGTAGTAGAACCC 29484 ||||| || || ||||||||||| | ||| ||||| || Sbjct 1977 CAGCGTACTTCATCGCCGCGGCCTAGGTAATAGAAGCC 2014 >seq121238 Length=2101 Score = 183 bits (202), Expect = 3e-41 Identities = 487/728 (67%), Gaps = 21/728 (3%) Strand=Plus/Plus Query 102323 TTGGACCACGCGCCCTTAAAATCGTAACTCATGAGGAATATTTTATCAAGGAACCTTTGA 102382 || ||||| || || || || ||||||||||| | ||| || | ||| | | ||||| Sbjct 648 TTTGACCAGGCACCTTTGAAGTCGTAACTCATCAAGAAAATATGATCCATATAATTTTGA 707 Query 102383 GCCGCGTCGTACTTCACCACGGCAATTTTGTCGTAGCCCGAACTAATCGCGCTCGTCAGC 102442 ||| | ||| | || || ||||| || | || | ||||| || || | Sbjct 708 GCCTTGCTGTAGTCAACAACTTGGATTTTATCCCACCCAGCGCTAATAGCAGAAGTTAAT 767 Query 102443 TCGTACGTCTTGTTCGTTTGCAGCTGC-AGTTCGTCCAGCATGGCGCGCAACTCTTTCAG 102501 ||||| |||| | || ||||| ||||| || ||||| | || || ||||||| Sbjct 768 TCGTATTTCTTAC-CATTCTTAGCTGAGAGTTCATCGAGCATCTCACGTAATTCTTTCAT 826 Query 102502 CAAAACAAGGTACGTGTCGGCGTCGCGCTCGCCGTTGCCGAGCGCCGGGTTGGCGCCCTT 102561 |||| | || || | || || | | | || || | ||||| ||||| || Sbjct 827 CAAACTTACATAACAATCACCATCTT-CTGGAC--TCCCAAGGTCAGGGTTAGCGCCTTT 883 Query 102562 GCCGCCCGGAAACTCCCAATCGATGTCCACCCCGTCGAAAAACTTCCACACCTGCAAAAA 102621 ||| || || |||||||||||||| || || || ||||| || ||||| | ||| Sbjct 884 GCCACCAGGGAACTCCCAATCGATATCAACACCATCGAAGAATTTCCATGTTAAAAGAAA 943 Query 102622 CTCTTTAACGGATTCGACAAACACGCGC-CGCTTGTCCGCGTCGTGCATGAAATAGAAC- 102679 ||| || || || | ||||| || | | ||| | | || | |||| |||| Sbjct 944 CTCCTTGACTGACTGCACAAAT-CGTGTTCTCTTA---GATTTGTCAACGAAAAAGAAGA 999 Query 102680 --GGGTCGGACAGCGTCCAGCCGCCAATGGACGGCAGGATTTTCAAATGCGGGTTTGCCA 102737 || || | |||||||| || ||||| || || || || ||||||| ||||| | | Sbjct 1000 ATGGATCAGCAAGCGTCCACCCACCAATAGAGGGAAGAATCTTCAAAT-CGGGTCGGGCT 1058 Query 102738 -GCTTGGCCGCCATCAACTGGCCAAAGTTGCCTTTGTAGGGCTCGTTCCATGCGGATACG 102796 | ||| | |||||| |||||||| |||||||||||||| || ||||||| || | Sbjct 1059 TGTTTGAGAGACATCAATTGGCCAAAATTGCCTTTGTAGGGTTCATTCCATGAAGACAAT 1118 Query 102797 CCCTTTTGCGGCTTTTGTATGGCGGCCCACGGGTCGTGGATAGCGACCTTAAAGTCTGCG 102856 || |||| || ||||||| || ||||| || || ||||| | ||| || || || || Sbjct 1119 CCTCTTTGTGGTTTTTGTAATGCTGCCCATGGATCATGGATTGAGACTTTGAAATCCTCG 1178 Query 102857 CGGCCTTTGCACGAGCGCTGCAGCGCTTCAAAACTGCC-GGGAATGGTCTTGAGCGCGTC 102915 ||||| | || || ||||| | |||| |||||||| || | || ||| ||| Sbjct 1179 CGGCCGCTACAAGATCGCTGTAATGCTTGGAAACTGCCTTCGATCTCTTTTAAGC-TGTC 1237 Query 102916 GTTTAGCCCGTCGCCGCCGCAAATCGGGATGAAGCCGTACAGCAGATGGGACAGGTTGGG 102975 || | ||||| ||||||||||| || ||||||||||| || ||||| | || || || Sbjct 1238 ATTGATACCGTCACCGCCGCAAATTGGAATGAAGCCGTAGAGTAGATGAGTAAGATTAGG 1297 Query 102976 CAGCGGCACTTTGTCCACCGGAAA--GCCGCGGCCGTACACGCCCCACTCTACGAAATAC 103033 | || | ||||| || || || || || || ||||| ||||||||||| Sbjct 1298 TATAGGTATACGATCCACAGGGAATTTCCTAGG--ATAAACACCCCATTCTACGAAATAA 1355 Query 103034 GCGGCCAC 103041 || |||| Sbjct 1356 GCACCCAC 1363 >seq2515 Length=4501 Score = 98.7 bits (108), Expect = 8e-16 Identities = 162/234 (69%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 20946 TTTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCC 21005 || || || || || | ||||| | |||||| ||||| ||||||||||||||||| || Sbjct 3696 TTACCTCCGCGAAGTCGCAGCACAAGATGCAATGTGGATTCCTTTTGAATGTTATAATCA 3637 Query 21006 GCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACG 21065 | || || | | || || ||||| || || ||| | || | || |||||||| Sbjct 3636 GACAATGTACGTCCATCTTCTAGCTGCTTACCAGCAAAGATCAATCGTTGCTGGTCTGGT 3577 Query 21066 GGCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCC 21125 || | |||||||| || |||||| ||| || | | | ||||||| || ||| Sbjct 3576 GGAATACCTTCCTTATCTTGGATCTTAGCTTTTACATTTTCAATAGTATCAGAGGCTTCC 3517 Query 21126 GTTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTG 21179 || | ||||||||| || || || | || ||||| || ||||||||| || Sbjct 3516 ACCTCAAGGGTAATGGTTTTACCCGTAAGGGTCTTGACGAAAATTTGCATTGTG 3463 >seq125169 Length=292 Score = 84.2 bits (92), Expect = 2e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 38729 GGCGGCGTGGGGCTGAACCTGACCGGCGGCAACCACATCATCATGCTGGAGCCGCACTGG 38788 ||||||||||||||||||||| ||| | | |||| | | ||||||| || |||||| Sbjct 168 GGCGGCGTGGGGCTGAACCTGTGCGGTGCGAGCCACCTGCTGCTGCTGGACCCTCACTGG 109 Query 38789 AACCCGCAAATTGAGCTGCAGGCGCAAGACCGCATCCACCGCATGGGCCAG 38839 || || || | ||| ||||||||| |||||| | ||||| |||| ||| Sbjct 108 AATCCTCAGCTGGAGGAGCAGGCGCAGGACCGCGTGTACCGCGTGGGGCAG 58 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420428455783556