Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neruda_20aoede_20[genbank_20GCA_5F900068225.1_202017-04-25] 355,741 sequences; 337,370,441 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq121238 197 1e-45 seq55701 89.7 4e-13 >seq121238 Length=2101 Score = 197 bits (218), Expect = 1e-45 Identities = 530/803 (66%), Gaps = 27/803 (3%) Strand=Plus/Plus Query 97380 ACGCCGGTCCAGCCGCGGCCGTACATGGCGACGCCCACAATTATTTTGTTGGGATCGACG 97439 || || ||||| || || || |||||||| || || || | || || || |||| || Sbjct 489 ACTCCAGTCCAACCACGACCATACATGGCAACACCTACTACAATCTTCTTAGGATTCACT 548 Query 97440 CCTTGTTCCAGTAACGCATCGACAGCGTAATGTGTAGTGTACAGCTCTTCCGAGTTCCAA 97499 || ||| | | || | || || | | | |||||| || | | |||||| Sbjct 549 CCCTGTGCTAACAAGTATTTTACTCCGAAGTCAGAAGTGTAAGTTTCCTTGGGGTTCCAT 608 Query 97500 CTTGGCGCGTAGACTGTTGTTTGGTAGCCCAA----ATCCGTGTTTGACCAAGCCCCTTT 97555 |||||||| | || |||||| | | |||| ||| |||||||| || ||||| Sbjct 609 GCAGGCGCGTACAATGGTGTTTGAT-GTCCAAGAGTATCA---TTTGACCAGGCACCTTT 664 Query 97556 AAAATCGTAAGTCATGAGAAATATTTTGTCTAATGACTTTTGCGCTTCGGCGTAGTTTAC 97615 || |||||| |||| | || || | || | | ||||| || | | ||||| || Sbjct 665 GAAGTCGTAACTCATCAAGAAAATATGATCCATATAATTTTGAGCCTTGCTGTAGTCAAC 724 Query 97616 CACGGCAATCTTGTCGTAGCCCGCGCTTATAGCGCTTGTTAATTCGTAAACCCTGCCGGT 97675 || || || || | || ||||| ||||| ||||||||||| | | || | Sbjct 725 AACTTGGATTTTATCCCACCCAGCGCTAATAGCAGAAGTTAATTCGTATTTCTTACCATT 784 Query 97676 TTGCACTTCGAGGTCGTCTAGCATTTCGCGCAGCTCATCCAACAACAGAATGTATGTTTT 97735 | || ||| || || ||||| || || | || | || ||| | || | Sbjct 785 CTTAGCTGAGAGTTCATCGAGCATCTCACGTAATTCTTTCATCAAACTTACATAACAATC 844 Query 97736 GGCGTCACGCTCCGCATCGCCCAGCGAC-GGGTTAGCCCCTTTGCCGCCCGGAAATTCCC 97794 | || || | | | |||| | | |||||||| |||||||| || || || |||| Sbjct 845 ACCATCT---TCTGGA-CTCCCAAGGTCAGGGTTAGCGCCTTTGCCACCAGGGAACTCCC 900 Query 97795 AATCGACGTCGACACCATCAAAAAATTTCCACACTTGCAAAAATTCCTTAACCGACTCTA 97854 |||||| || |||||||| || |||||||| | | ||| ||||| || |||| | Sbjct 901 AATCGATATCAACACCATCGAAGAATTTCCATGTTAAAAGAAACTCCTTGACTGACTGCA 960 Query 97855 CAAAAACGT-TTCT------TTTTTCAACGTCGTGCATGAAATAGAACGGGTCCGACAGA 97907 |||| ||| |||| ||| |||||| | || |||| || || | || Sbjct 961 CAAAT-CGTGTTCTCTTAGATTTGTCAACG------AAAAAGAAGAATGGATCAGCAAGC 1013 Query 97908 GTCCAGCCTCCTATTGAAGGAAGAATTTTTAGATGTGGGTTTGCTAATTTCGCCGCCATC 97967 ||||| || || || || |||||||| || | || || ||| ||| | |||| Sbjct 1014 GTCCACCCACCAATAGAGGGAAGAATCTTCAAATCGGGTCGGGCTTGTTTGAGAGACATC 1073 Query 97968 AATTGTCCAAAATTGCCTTTGTACGGTTCGTTCCAAGCGGACACGCCCTTTTGGGGTTTT 98027 ||||| ||||||||||||||||| ||||| ||||| | |||| || |||| |||||| Sbjct 1074 AATTGGCCAAAATTGCCTTTGTAGGGTTCATTCCATGAAGACAATCCTCTTTGTGGTTTT 1133 Query 98028 TGTACGGCGGCCCACGGATCGTGGATGGCAACTTTGAAATCTTCGCGTCCCCTGCACGAT 98087 |||| || ||||| ||||| ||||| | ||||||||||| ||||| || || || ||| Sbjct 1134 TGTAATGCTGCCCATGGATCATGGATTGAGACTTTGAAATCCTCGCGGCCGCTACAAGAT 1193 Query 98088 CGTTGCAGAGCTTCAAAACTTCCGGGTATTGTTTTGAGGGCGTCGTTTATTCCATCGCCA 98147 || || | |||| ||||| || || ||| | | ||| || || || || || Sbjct 1194 CGCTGTAATGCTTGGAAACTGCCTTCGATCTCTTTTAAGCTGTCATTGATACCGTCACCG 1253 Query 98148 CCGCAGATGGGTATGAAACCGTA 98170 ||||| || || ||||| ||||| Sbjct 1254 CCGCAAATTGGAATGAAGCCGTA 1276 >seq55701 Length=1651 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 ||||||||| || | || ||| | || ||||| || ||||| ||| |||| | | Sbjct 297 AATGCAAATTTTTGTAAAGACACTTACAGGCAAGACTATTACTTTGGAAGTGGAAGCTTC 238 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 || || | | || | ||| |||||| |||||||| || | ||| |||||| Sbjct 237 TGATACAATTGAAAATGTTAAGGCGAAAATTCAGGATAAAGAGGGCATTCCCCCAGATCA 178 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213 ||||||||||| ||||| || || || | |||||| ||| | | || ||||| Sbjct 177 GCAAAGACTTATTTTTGCTGGAAAGCAGCTTGAAGATGGACGCACTCTATCTGACTACAA 118 Query 25214 TATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGGG 25262 |||||| || ||||||||| | ||| |||| |||| | |||| ||| Sbjct 117 TATTCAGAAAGAATCTACTTTGCACCTGGTACTACGTCTGAGAGGTGGG 69 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 409015752089774