Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neruda_20aoede_20[genbank_20GCA_5F900068225.1_202017-04-25] 355,741 sequences; 337,370,441 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq49004 118 1e-21 seq55701 107 2e-18 seq37844 98.7 1e-15 seq54613 91.5 2e-13 seq2515 87.8 2e-12 >seq49004 Length=3997 Score = 118 bits (130), Expect = 1e-21 Identities = 162/224 (72%), Gaps = 2/224 (1%) Strand=Plus/Plus Query 116945 TTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGC 117004 ||||| || || || ||||| | ||||| || || ||||||| || ||||| ||| Sbjct 89 TTGTTCAATGCTATTGAGACTCTACCGTGTGTTAAGAAGAAGGCAGACTGGGCATTGCAG 148 Query 117005 TGGATCGCCGGCAGAGA-GGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGA 117063 ||||| | ||| ||| |||| | || | || || | | || || ||||| || || Sbjct 149 TGGATTGGTAGCA-AGACGGCCACATTTGCAGAACGTATAATCGCTTTTGCGGCGGTTGA 207 Query 117064 GGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCAT 117123 ||| | || || |||||||| || || | ||||||||| | || ||||| || || || Sbjct 208 GGGAATATTTTTCTCGGGCAGCTTTGCTTCAATATTTTGGTTGAAAAAACGAGGTCTGAT 267 Query 117124 GCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGG 117167 |||||| ||||||||||||| || || || || ||||| |||| Sbjct 268 GCCCGGATTGACTTTCAGCAATGAACTTATTTCTAGGGATGAGG 311 >seq55701 Length=1651 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||||||||| | || || ||||||||||| | || || ||||| | Sbjct 524 ATGCAAATCTTCGTAAAAACCTTAACCGGGAAAACCATCACATTGGAAGTGGAAGCTTCT 465 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | |||| | |||| ||| |||| |||||||||||||| || | || || Sbjct 464 GATACAATCGAGAACG-TAAAGGCAAAGATTCAGGACAAAGAGGGCATTCCTCCAGATCA 406 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| |||| || | ||| || || || || || || | ||| || | ||||| || Sbjct 405 ACAAAGACTAATTTTCGCCGGAAAGCAACTAGAAGATGGGCGTACATTGTCAGACTATAA 346 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 || |||||||| | || |||| ||||| ||||| | ||||| || Sbjct 345 TATTCAGAAGGAATCAACTTTGCACTTAGTGCTGCGCCTTAGGGGTGG 298 Score = 91.5 bits (100), Expect = 2e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 ||||||||| || ||||| || || || ||||| || || || | || || ||||| | Sbjct 297 AATGCAAATTTTTGTAAAGACACTTACAGGCAAGACTATTACTTTGGAAGTGGAAGCTTC 238 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | ||| | |||| ||||||| || ||||||||||| ||| | || || Sbjct 237 TGATACAATTGAAAATGTTAAGGCGAAAATTCAGGATAAAGAGGGCATTCCCCCAGATCA 178 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||| |||| || | || || || ||||| || || | ||||| || |||||||| Sbjct 177 GCAAAGACTTATTTTTGCTGGAAAGCAGCTTGAAGATGGACGCACTCTATCTGACTACAA 118 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 || ||||| || | || |||| || || | || |||| || || Sbjct 117 TATTCAGAAAGAATCTACTTTGCACCTGGTACTACGTCTGAGAGGTGG 70 >seq37844 Length=1442 Score = 98.7 bits (108), Expect = 1e-15 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCA-C 40748 ||||| || || || || || || || || |||||||| || | || || || |||| | Sbjct 286 ATGCAGATTTTTGTTAAGACACTTACTGGGAAAACCATTACTTTAGAGGTGGA-GCCAGC 344 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||||| | ||| | |||| || || | ||||| ||||| || ||| | || || Sbjct 345 CGACACTATTGAAAATGTTAAGGCTAAGATCCAAGACAAGGAGGGTATTCCCCCAGATCA 404 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 || || || |||| ||| ||||| || || || || | |||||||| |||||||| Sbjct 405 ACAGCGTCTTATCTTCGCAGGCAAGCAACTAGAAGATGGCCGCACCCTGTCTGACTACAA 464 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 |||||| || ||| | || |||||| ||||| Sbjct 465 CATCCAAAAAGAGTCTACTCTGCATTTAGTG 495 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || ||||| || ||||| || ||||| ||||| | || || ||| | | Sbjct 58 ATGCAGATCTTTGTAAAGACACTCACAGGGAAAACAATCACATTAGAAGTTGAACCTTCG 117 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | ||| | || | || || | ||||||||||| || || | ||||| Sbjct 118 GACACTATTGAAAATGTTAAAGCCAAGATCCAAGACAAAGAGGGTATTCCTCCAGACCAA 177 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| || || | ||| || || |||||||| || | || || ||| ||||||||| Sbjct 178 CAACGTCTAATTTTCGCTGGTAAGCAGCTGGAGGATGGTCGTACTCTCGCCGACTACAAT 237 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 || ||||| ||| | || |||| | || ||||| Sbjct 238 ATTCAGAAAGAGTCTACTTTGCACTTGGTATTGCG 272 >seq54613 Length=3623 Score = 91.5 bits (100), Expect = 2e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 |||||||| || || || ||||| || ||||| |||||||| || | || || ||||| Sbjct 2440 AAAATGCAGATTTTTGTCAAAACACTTACGGGTAAAACCATTACTTTGGAAGTTGAAGCT 2499 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 |||| | | ||| | || | ||||||| ||||| || ||||| || | || Sbjct 2500 TCCGATACTATTGAAAATGTAAAAGCCAAAATTCAAGACAAGGAAGGCATTCCTCCAGAT 2559 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 || ||||| | || | || || || || | || || | || || || |||||| Sbjct 2560 CAACAACGTTTGATTTTTGCTGGAAAGCAATTAGAAGATGGCCGTACACTTTCTGACTAC 2619 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 |||||||| |||||| | || || |||||||| |||| Sbjct 2620 AACATCCAAAAGGAGTCTACCCTTCATCTAGTACTGCG 2657 >seq2515 Length=4501 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 ||||||||| ||||| || || || ||||| |||||||| ||| | || || |||||| | Sbjct 3466 AATGCAAATTTTCGTCAAGACCCTTACGGGTAAAACCATTACCCTTGAGGTGGAAGCCTC 3525 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | ||| | || | || || | || || || || || || | ||||| Sbjct 3526 TGATACTATTGAAAATGTAAAAGCTAAGATCCAAGATAAGGAAGGTATTCCACCAGACCA 3585 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||||||| | |||| || || || ||||| || || | || || | || || || Sbjct 3586 GCAACGATTGATCTTTGCTGGTAAGCAGCTAGAAGATGGACGTACATTGTCTGATTATAA 3645 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||| || ||||| |||| ||||||| ||| |||| Sbjct 3646 CATTCAAAAGGAATCCACATTGCATCTTGTGCTGCG 3681 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 512928142582160