Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neruda_20aoede_20[genbank_20GCA_5F900068225.1_202017-04-25] 355,741 sequences; 337,370,441 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq54613 181 2e-40 seq55701 170 3e-37 seq110694 129 9e-25 seq2515 125 1e-23 seq231499 100 4e-16 seq110695 100 4e-16 >seq54613 Length=3623 Score = 181 bits (200), Expect = 2e-40 Identities = 178/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| |||||||||| ||||| ||||| || ||| |||| ||||||| | Sbjct 3346 ATGCAGATCTTTGTAAAGACACTTACAGGGAAAACAATCACTTTAGAAGTTGAAGCCTCT 3405 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||||||| ||| ||||| ||||| ||||| ||||| ||||| ||||||||||| Sbjct 3406 GATACAATTGAAAATGTAAAAGCTAAAATCCAAGACAAAGAGGGTATCCCACCTGATCAG 3465 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | ||||| ||||| || || |||||||| ||| |||| ||| || || |||||| Sbjct 3466 CAGCGTCTTATCTTTGCTGGTAAGCAATTAGAAGATGGTCGCACACTATCTGACTATAAT 3525 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 |||||||||||||| || | ||| |||| | ||| | ||||| || || Sbjct 3526 ATTCAAAAAGAATCCACCCTTCATCTGGTACTGCGTCTGCGAGGAGGCAT 3575 Score = 156 bits (172), Expect = 6e-33 Identities = 151/194 (78%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| |||||||||| || || ||||| || ||| |||| ||||||| | Sbjct 2887 ATGCAGATCTTTGTAAAGACACTCACTGGGAAAACAATCACTTTAGAAGTTGAAGCCTCT 2946 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||||||| ||| ||||| ||||| ||||| ||||| || || ||||||||||| Sbjct 2947 GATACAATTGAAAATGTAAAAGCTAAAATCCAAGACAAAGAGGGCATCCCACCTGATCAG 3006 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | ||||| ||||| || || |||||||| ||| |||| ||| || || || ||| Sbjct 3007 CAGCGTCTTATCTTTGCTGGTAAGCAATTAGAAGATGGTCGCACACTATCTGACTACAAT 3066 Query 124719 ATTCAAAAAGAATC 124732 |||||||||||||| Sbjct 3067 ATTCAAAAAGAATC 3080 Score = 129 bits (142), Expect = 9e-25 Identities = 167/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||| || ||| | || ||||| || || ||||| || ||| | || ||||||| Sbjct 2442 AATGCAGATTTTTGTCAAAACACTTACGGGTAAAACCATTACTTTGGAAGTTGAAGCTTC 2501 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||| ||| ||| ||||| ||||||||||| || ||||| || || || ||||| Sbjct 2502 CGATACTATTGAAAATGTAAAAGCCAAAATTCAAGACAAGGAAGGCATTCCTCCAGATCA 2561 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||| | | |||||||| ||||| |||||||| ||| | || ||| | || || || Sbjct 2562 ACAACGTTTGATTTTTGCTGGAAAGCAATTAGAAGATGGCCGTACACTTTCTGACTACAA 2621 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || ||||| || || || | ||| | || | ||| | ||||||||||| Sbjct 2622 CATCCAAAAGGAGTCTACCCTTCATCTAGTACTGCGTCTGCGAGGTGGTAT 2672 >seq55701 Length=1651 Score = 170 bits (188), Expect = 3e-37 Identities = 181/239 (76%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| ||| |||||||||| |||||||| ||||| ||| | || | ||||| Sbjct 297 AATGCAAATTTTTGTAAAGACACTTACAGGCAAGACTATTACTTTGGAAGTGGAAGCTTC 238 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 |||||||||| ||| | || ||||||||| |||||||| || || || || ||||| Sbjct 237 TGATACAATTGAAAATGTTAAGGCGAAAATTCAGGATAAAGAGGGCATTCCCCCAGATCA 178 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||||| ||||||||||| ||||| || | || ||| | || || || || || || Sbjct 177 GCAAAGACTTATTTTTGCTGGAAAGCAGCTTGAAGATGGACGCACTCTATCTGACTACAA 118 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 |||||| |||||||| |||||||| |||| ||||| | ||||||| || ||| || Sbjct 117 TATTCAGAAAGAATCTACTTTGCACCTGGTACTACGTCTGAGAGGTGGGATGCAAATTT 59 Score = 129 bits (142), Expect = 9e-25 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || |||| || |||| || ||||| || || | || | ||||| | Sbjct 524 ATGCAAATCTTCGTAAAAACCTTAACCGGGAAAACCATCACATTGGAAGTGGAAGCTTCT 465 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 |||||||| || |||| || ||||| || ||||| || || || || |||||| Sbjct 464 GATACAATCGAGAACGTAAAGGCAAAGATTCAGGACAAAGAGGGCATTCCTCCAGATCAA 405 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||||| || ||||| || ||||| ||| |||| ||| | || ||||| ||| |||||| Sbjct 404 CAAAGACTAATTTTCGCCGGAAAGCAACTAGAAGATGGGCGTACATTGTCAGACTATAAT 345 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGT 124747 ||||| || |||||||||||||| || || Sbjct 344 ATTCAGAAGGAATCAACTTTGCACTTAGT 316 >seq110694 Length=236 Score = 129 bits (142), Expect = 9e-25 Identities = 138/180 (77%), Gaps = 2/180 (1%) Strand=Plus/Minus Query 124590 GAAGCAAATGATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACC 124648 ||||| ||||||||| ||| |||| || || ||||| || ||||||||||| || Sbjct 230 GAAGCTTCTGATACAATCGAAAATGTTAAGGCA-AAGATTCAGGACAAAGAAGGTATTCC 172 Query 124649 ACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGA 124708 || || ||||| ||||| |||||||| ||||| ||| | || ||| | || ||||| Sbjct 171 TCCAGACCAACAGAGGCTGATTTTTGCTGGAAAGCAACTCGAAGATGGCCGCACATTGTC 112 Query 124709 AGATTATAATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || |||||||| || || |||||||||||||| || || || |||||| ||||||| || Sbjct 111 TGACTATAATATCCAGAAGGAATCAACTTTGCACTTAGTGTTGCGTTTAAGAGGTGGAAT 52 >seq2515 Length=4501 Score = 125 bits (138), Expect = 1e-23 Identities = 152/207 (73%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 124536 ACAATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCA 124595 ||||||||||| || | ||||| || || || ||||| || || | ||| | ||||| Sbjct 3464 ACAATGCAAATTTTCGTCAAGACCCTTACGGGTAAAACCATTACCCTTGAGGTGGAAGCC 3523 Query 124596 AATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGAT 124655 |||||| ||| ||| ||||| || || |||||||| |||||||| ||||| || Sbjct 3524 TCTGATACTATTGAAAATGTAAAAGCTAAGATCCAAGATAAGGAAGGTATTCCACCAGAC 3583 Query 124656 CAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTAT 124715 || ||| | | || ||||| || || || |||| ||| | || ||||| |||||| Sbjct 3584 CAGCAACGATTGATCTTTGCTGGTAAGCAGCTAGAAGATGGACGTACATTGTCTGATTAT 3643 Query 124716 AATATTCAAAAAGAATCAACTTTGCAT 124742 || |||||||| ||||| || |||||| Sbjct 3644 AACATTCAAAAGGAATCCACATTGCAT 3670 >seq231499 Length=289 Score = 100 bits (110), Expect = 4e-16 Identities = 150/208 (72%), Gaps = 9/208 (4%) Strand=Plus/Minus Query 203520 TATAAGTATGTTTAATAATAGGTATAAATTCAGTTAAATATTCTGATAATTTATAATTTA 203579 |||||| ||||||||||| ||| ||| || || | |||||| ||| ||| |||| | Sbjct 282 TATAAGGATGTTTAATAACTGGTGGAAAGTCGGTGAGATATTCATCTAACTTAGAATTGA 223 Query 203580 TTTTATTTCTAATGGTTTTTGCAGAATATTCTAATTTATTACTAGCAATCCAACATGGTA 203639 |||||||||| || ||| | || |||||||| ||||| | || | ||||||||| | Sbjct 222 TTTTATTTCTTATTGTTCTCGCTGAATATTCCTGTTTATCAGACGCTACCCAACATGGCA 163 Query 203640 CAATATTATGTGAATCAACTTGATAAACATCAATATTTATTTTACT--AATAAG--TTGA 203695 | | ||| || | || || ||| ||| || || || |||| || | ||||| ||| Sbjct 162 CCACATTGTGAGCGTCTACCTGAAAAATATTAAAATATATTATAATGGTATAAGTTTTGT 103 Query 203696 TTTACCCAAT-TATTAAATATTTTAATA 203722 ||| |||| |||| |||||| | ||| Sbjct 102 TTT---CAATATATT-AATATTATGATA 79 >seq110695 Length=218 Score = 100 bits (110), Expect = 4e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 124644 ATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACA 124703 || || || ||||||||||| || |||||||| ||||| ||| | || ||| | || ||| Sbjct 218 ATTCCTCCAGATCAACAAAGACTGATTTTTGCTGGAAAGCAACTGGAAGATGGGCGCACA 159 Query 124704 TTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGT 124763 || || |||||||| || || |||||||||||||| || || || ||| || ||||| Sbjct 158 TTGTCCGACTATAATATCCAGAAGGAATCAACTTTGCACTTAGTGTTGCGTCTAAGAGGT 99 Query 124764 GGTAT 124768 || || Sbjct 98 GGAAT 94 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 752096666588800