Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neruda_20aoede_20[genbank_20GCA_5F900068225.1_202017-04-25] 355,741 sequences; 337,370,441 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq121238 147 2e-30 seq37844 125 6e-24 seq54613 96.9 3e-15 seq55701 93.3 4e-14 seq54614 93.3 4e-14 seq2515 89.7 4e-13 >seq121238 Length=2101 Score = 147 bits (162), Expect = 2e-30 Identities = 341/509 (67%), Gaps = 10/509 (2%) Strand=Plus/Minus Query 21569 AAAATCGTGGCGGCCTACTTTGTCGAATGGGGAGTGTACCTGAGACAGTTCCCCGTCGAC 21628 ||| | |||| || || || || |||||||| || || | || | ||||| || || Sbjct 1369 AAAGTTGTGGGTGCTTATTTCGTAGAATGGGGTGTTTATCCTAGGAAATTCCCTGTGGAT 1310 Query 21629 AAGGTGCCGGCGCCGAATCTATCACATATACTATACGGCTTCGTGCCGATATGCGGAGGC 21688 | || || ||||| | ||| |||| ||||||||| | || || ||||| || Sbjct 1309 CGTATACCTATACCTAATCTTACTCATCTACTCTACGGCTTCATTCCAATTTGCGGCGGT 1250 Query 21689 GACGGCATCAACGACGCGCTAAAAACGGTGCCTGGCAGTTTTGAGGCATTGCAACGTTCG 21748 ||||| ||||| ||| ||||| | | |||||||| | ||||| || || || Sbjct 1249 GACGGTATCAATGACAGCTTAAAAGAGATCGAAGGCAGTTTCCAAGCATTACAGCGATCT 1190 Query 21749 TGTGCGGGTCGGGCCGATTTCAAGGTGGCTATACACGATCCGTGGGCCGCAATACAAAAG 21808 ||| || || | |||||||| || | || || ||||| ||||| ||| ||||||| Sbjct 1189 TGTAGCGGCCGCGAGGATTTCAAAGTCTCAATCCATGATCCATGGGCAGCATTACAAAAA 1130 Query 21809 CCCCAAAAGGGCGTCTCGTCATGGAACGAACCGTACAAAGGCAACTTTGGTCAACTGATG 21868 || |||| || | || |||||||| ||||| ||||||||||| ||||| ||| ||||| Sbjct 1129 CCACAAAGAGGATTGTCTTCATGGAATGAACCCTACAAAGGCAATTTTGGCCAATTGATG 1070 Query 21869 GCAATGAAGAGGGCCAATCCTCACATTAA-AGTGTTCGCATCGATCGGCGGATGGACTCT 21927 | | || ||| || | | || | | ||| | || || || || ||||| || Sbjct 1069 TCTCTCAAACAAGCCCGACCCGATTTGAAGATTCTTC-CCTCTATTGGTGGGTGGACGCT 1011 Query 21928 GTCCGATCCATTTTATCATATGC----ACGACGCCGACGTCAGACGGGTGTTTATCGATT 21983 | |||||||| | || | | | || | | | | ||| ||| | | | Sbjct 1010 TGCTGATCCATTCT-TCTTTTTCGTTGACAAATCTAAGAGAACACG---ATTTGTGCAGT 955 Query 21984 CAGTTGAAGAATTTCTGCTCACGTGGAAGTTCTATGACGGCGTCCACATCGATTGGGAGT 22043 |||| | || ||||| | || ||||| |||| || || || | ||||||||||||| Sbjct 954 CAGTCAAGGAGTTTCTTTTAACATGGAAATTCTTCGATGGTGTTGATATCGATTGGGAGT 895 Query 22044 TTCCCGGCGGCAAGGGAGCCAACCCCGAC 22072 | || || ||||| || || ||||| ||| Sbjct 894 TCCCTGGTGGCAAAGGCGCTAACCCTGAC 866 >seq37844 Length=1442 Score = 125 bits (138), Expect = 6e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 ||||||| || | | ||| |||||||| | ||||||||||| ||||| ||||| ||| Sbjct 286 TACCTCCTCGGAGACGCAATACCAAGTGCAAAGTAGACTCTTTCTGAATATTGTAGTCGG 227 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | ||| || |||||| ||||| || |||||| | || ||||| || || || |||| Sbjct 226 CGAGAGTACGACCATCCTCCAGCTGCTTACCAGCGAAAATTAGACGTTGTTGGTCTGGAG 167 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | || ||||| |||||| || || |||||| | ||| | ||||||| || | Sbjct 166 GAATACCCTCTTTGTCTTGGATCTTGGCTTTAACATTTTCAATAGTGTCCGAAGGTTCAA 107 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | || | || | ||||| || || || || |||||||| |||||||| Sbjct 106 CTTCTAATGTGATTGTTTTCCCTGTGAGTGTCTTTACAAAGATCTGCAT 58 Score = 113 bits (124), Expect = 4e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||| || || | |||||||||||||| |||||||| || || ||||| ||| || Sbjct 495 CACTAAATGCAGAGTAGACTCTTTTTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTC 436 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 || || || || ||| |||| |||||||| ||||| || || || |||||||||||| Sbjct 435 TAGTTGCTTGCCTGCGAAGATAAGACGCTGTTGATCTGGGGGAATACCCTCCTTGTCTTG 376 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 || || ||||| | ||| | ||||| | ||| ||||| | || | ||||| Sbjct 375 GATCTTAGCCTTAACATTTTCAATAGTGTCGGCTGGCTCCACCTCTAAAGTAATGGTTTT 316 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || || || || |||||||||||||| Sbjct 315 CCCAGTAAGTGTCTTAACAAAAATCTGCAT 286 >seq54613 Length=3623 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/196 (71%), Gaps = 4/196 (2%) Strand=Plus/Minus Query 118545 GACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGT--ATCCTCGAGCTGTTTTCCAG 118602 || ||||||||||| ||||| || |||||| ||| ||| || | || || |||| Sbjct 3080 GATTCTTTTTGAATATTGTAGTCAG--ATAGTGTGCGACCATCTTCTAATTGCTTACCAG 3023 Query 118603 CGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAA 118662 | |||| |||||||||||||| || || |||||||| |||||| ||||| ||| | Sbjct 3022 CAAAGATAAGACGCTGCTGATCAGGTGGGATGCCCTCTTTGTCTTGGATTTTAGCTTTTA 2963 Query 118663 CCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTT 118722 | | ||| | || || | | || || || | || | ||||| || || || || | Sbjct 2962 CATTTTCAATTGTATCAGAGGCTTCAACTTCTAAAGTGATTGTTTTCCCAGTGAGTGTCT 2903 Query 118723 TTACAAAAATCTGCAT 118738 ||||||| |||||||| Sbjct 2902 TTACAAAGATCTGCAT 2887 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 |||||||| ||||| |||||||| || | || || ||| || | || |||||| Sbjct 2639 GTAGACTCCTTTTGGATGTTGTAGTCAGAAAGTGTACGGCCATCTTCTAATTGCTTTCCA 2580 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || | || | ||| || ||||| ||||| ||||| ||||||||| |||||| ||| Sbjct 2579 GCAAAAATCAAACGTTGTTGATCTGGAGGAATGCCTTCCTTGTCTTGAATTTTGGCTTTT 2520 Query 118662 ACCTGTTCGACGGTGTCCGT-GCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGT 118720 || | ||| | || || | ||| || || || | || | ||||| || || || || Sbjct 2519 ACATTTTCAATAGTATCGGAAGCT-TCAACTTCCAAAGTAATGGTTTTACCCGTAAGTGT 2461 Query 118721 TTTTACAAAAATCTGCAT 118738 ||| |||||||||||||| Sbjct 2460 TTTGACAAAAATCTGCAT 2443 Score = 87.8 bits (96), Expect = 2e-12 Identities = 140/199 (70%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGT--ATCCTCGAGCTGTTTTC 118599 || || ||||||||||| || || || |||||| ||| ||| || | || || | Sbjct 3542 GTGGATTCTTTTTGAATATTATAGTCAG--ATAGTGTGCGACCATCTTCTAATTGCTTAC 3485 Query 118600 CAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTT 118659 |||| |||| |||||||||||||| || || || ||||| |||||| ||||| || Sbjct 3484 CAGCAAAGATAAGACGCTGCTGATCAGGTGGGATACCCTCTTTGTCTTGGATTTTAGCTT 3425 Query 118660 TAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAG 118719 | || | ||| | || || | | || || || | || | ||||| || || || | Sbjct 3424 TTACATTTTCAATTGTATCAGAGGCTTCAACTTCTAAAGTGATTGTTTTCCCTGTAAGTG 3365 Query 118720 TTTTTACAAAAATCTGCAT 118738 | |||||||| |||||||| Sbjct 3364 TCTTTACAAAGATCTGCAT 3346 Score = 84.2 bits (92), Expect = 2e-11 Identities = 119/165 (72%), Gaps = 2/165 (1%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 || ||||| | || ||||| ||||| |||||||| || | || || ||| || Sbjct 3326 ACTAAGTGAAGGGTGGACTCCTTTTGGATGTTGTAGTCCGATAAGGTACGGCCATCTTCC 3267 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 || || || || ||| |||| |||||||| ||||| ||||| || |||||||||||| Sbjct 3266 AGTTGCTTGCCTGCGAAGATAAGACGCTGTTGATCTGGAGGAATACCCTCCTTGTCTTGG 3207 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTC 118693 || || ||||| | ||| | |||||| | ||| ||| ||||| Sbjct 3206 ATCTTAGCCTTAACATTTTCAATGGTGTCAGATGC-CTCTACCTC 3163 >seq55701 Length=1651 Score = 93.3 bits (102), Expect = 4e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||| | ||||| ||||| ||||| ||||| || | |||||| ||| || Sbjct 88 ACCAGGTGCAAAGTAGATTCTTTCTGAATATTGTAGTCAGATAGAGTGCGTCCATCTTCA 147 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| |||||||| | || || | |||||||| || || |||||||| || || | Sbjct 148 AGCTGCTTTCCAGCAAAAATAAGTCTTTGCTGATCTGGGGGAATGCCCTCTTTATCCTGA 207 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGT-GCTCTCGACCTCGACGGTCACCGTTTT 118708 ||||| ||||| | ||| | || || | ||| || || || | || | || || Sbjct 208 ATTTTCGCCTTAACATTTTCAATTGTATCAGAAGCT-TCCACTTCCAAAGTAATAGTCTT 266 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||| || || || ||||||||||| ||||| Sbjct 267 GCCTGTAAGTGTCTTTACAAAAATTTGCAT 296 >seq54614 Length=296 Score = 93.3 bits (102), Expect = 4e-14 Identities = 122/169 (72%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 ||||||| || | | ||| |||||||| | ||||||||||| ||||| ||||| ||| Sbjct 104 TACCTCCTCGGAGACGCAATACCAAGTGCAAAGTAGACTCTTTCTGAATATTGTAGTCGG 163 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | || || |||||| ||||| || ||||| | || ||||| || || || |||| Sbjct 164 CGAGCGTACGACCATCCTCCAGCTGCTTACCAGCAAAAATTAGACGTTGTTGGTCTGGAG 223 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTC 118678 | || ||||| |||||| || || |||||| | ||| | ||||| Sbjct 224 GAATACCCTCTTTGTCTTGGATCTTGGCTTTAACATTTTCAATAGTGTC 272 >seq2515 Length=4501 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||||||||| | || || ||| | || | ||| || || ||||||||||| ||||| Sbjct 3695 TACCTCCGCGAAGTCGCAGCACAAGATGCAATGTGGATTCCTTTTGAATGTTATAATCAG 3636 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 || || || ||| || ||||| || ||||| |||| | || ||||| || || | Sbjct 3635 ACAATGTACGTCCATCTTCTAGCTGCTTACCAGCAAAGATCAATCGTTGCTGGTCTGGTG 3576 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | || || ||||| ||| || || ||| || | ||| | || || | | || | Sbjct 3575 GAATACCTTCCTTATCTTGGATCTTAGCTTTTACATTTTCAATAGTATCAGAGGCTTCCA 3516 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||| | ||| | ||||| || || || || || || ||||| ||||| Sbjct 3515 CCTCAAGGGTAATGGTTTTACCCGTAAGGGTCTTGACGAAAATTTGCAT 3467 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 431949487764772