Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neruda_20aoede_20[genbank_20GCA_5F900068225.1_202017-04-25] 355,741 sequences; 337,370,441 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq121238 277 2e-69 seq234333 116 4e-21 seq37844 116 4e-21 seq2515 105 8e-18 seq177858 102 9e-17 seq53601 100 3e-16 seq53602 96.9 4e-15 seq218814 95.1 1e-14 seq111469 95.1 1e-14 seq82191 95.1 1e-14 seq55701 95.1 1e-14 seq54613 95.1 1e-14 seq36464 95.1 1e-14 seq8828 95.1 1e-14 seq54614 84.2 2e-11 >seq121238 Length=2101 Score = 277 bits (306), Expect = 2e-69 Identities = 660/991 (67%), Gaps = 29/991 (3%) Strand=Plus/Minus Query 96454 AAAGTGACGGGGGCTTATTTTGTAGAATGGGGCGTGTACGATCGTAAGTTTCCCGCGGAC 96513 ||||| ||| |||||||| ||||||||||| || || | | || || || | ||| Sbjct 1369 AAAGTTGTGGGTGCTTATTTCGTAGAATGGGGTGTTTATCCTAGGAAATTCCCTGTGGAT 1310 Query 96514 AAGGTGCCCATTCCCAATCTGACGCATCTATTGTACGGTTTTATACCCATTTGCGGAGGC 96573 | || || || ||||| || |||||| | ||||| || || || |||||||| || Sbjct 1309 CGTATACCTATACCTAATCTTACTCATCTACTCTACGGCTTCATTCCAATTTGCGGCGGT 1250 Query 96574 GACGGTATCAACGACAGTCTAAAACAGGTACCCGGCTCTTTTGAGGCTTTACAAAAATCA 96633 ||||||||||| ||||| ||||| || | ||| ||| | || ||||| ||| Sbjct 1249 GACGGTATCAATGACAGCTTAAAAGAGATCGAAGGCAGTTTCCAAGCATTACAGCGATCT 1190 Query 96634 TGTGCCGGCAGAGACGATTTCAAGGTTAGCATCCACGACATTTACGGTGCTCTACAAAAA 96693 ||| |||| | || |||||||| || ||||| || | | || |||||||| Sbjct 1189 TGTAGCGGCCGCGAGGATTTCAAAGTCTCAATCCATGATCCATGGGCAGCATTACAAAAA 1130 Query 96694 CCGCAAAAAGGTGTTTCCGAATACAATGAACCTTACCGTGGCAATTTTGGCCAGCTCATG 96753 || |||| ||| | || || |||||||| ||| |||||||||||||| | ||| Sbjct 1129 CCACAAAGAGGATTGTCTTCATGGAATGAACCCTACAAAGGCAATTTTGGCCAATTGATG 1070 Query 96754 GCTATTCGCAAACATAAC---CCTCATTTAAAAATTTTGCCTAGCATCGGTGGTTGGACA 96810 | || |||||| | || |||| || ||| | || || ||||| ||||| Sbjct 1069 TC---TCTCAAACAAGCCCGACCCGATTTGAAGATTCTTCCCTCTATTGGTGGGTGGACG 1013 Query 96811 CTGAGCGACCCTTTCTATTTTTTCGCCGACGACTATAAACGAAAAGTATTTGTGGACTCG 96870 || || || |||| ||||||| ||| | | ||| ||| | ||||||| | || Sbjct 1012 CTTGCTGATCCATTCTTCTTTTTCGTTGACAAATCTAAGAGAACACGATTTGTGCAGTCA 953 Query 96871 GTTCGTGA-ATTCTTGCAAGTGTGGAAGTTTTTCGATGGAGTAGACATCGACTGGGAGTT 96929 || || ||||| || ||||| || |||||||| || || ||||| |||||||| Sbjct 952 GTCAAGGAGTTTCTTTTAA-CATGGAAATTCTTCGATGGTGTTGATATCGATTGGGAGTT 894 Query 96930 TCCCGGCGGAAAGGGTGCCAACCCCGACGTAGGCGATCCTAGCGTGGATGGAAACACATA 96989 || || || || || || ||||| ||| | || ||| | ||||| | || Sbjct 893 CCCTGGTGGCAAAGGCGCTAACCCTGACCTTGGGAGTCC---AGAAGATGGTGATTGTTA 837 Query 96990 TGTAACACTATTGAAAGAACTACGCCTAATGCTAGACAAA-------CTGGGTGTGGTGA 97042 ||||| | |||||||| |||| ||||| || || || | |||| | Sbjct 836 TGTAAGTTTGATGAAAGAATTACGTGAGATGCTCGATGAACTCTCAGCTAAGAATGGT-A 778 Query 97043 ACAAACGCGTGTACGAGTTGACCAGCGCCGTGGGAGCAGGCTACGATAAAATAGACGTGA 97102 | ||| ||||| || || || | | || || | |||||||| | || Sbjct 777 AGAAA------TACGAATTAACTTCTGCTATTAGCGCTGGGTGGGATAAAATCCAAGTTG 724 Query 97103 TAGATTACTCTTCGGCTAGTCAATATTTGGATCATGTGTTTTTAATGAGTTACGACTTCA 97162 | || ||| |||| | ||| |||||||| | || || |||||||||||||||| Sbjct 723 TTGACTACAGCAAGGCTCAAAATTATATGGATCATATTTTCTTGATGAGTTACGACTTCA 664 Query 97163 AAGGCGCATGGTCCAACACGGATTTGGGTCATCAAACACCATTGTACGCACCTTCGTGGA 97222 |||| || ||||| || | | || |||||||||||||||||||| ||| | |||| Sbjct 663 AAGGTGCCTGGTCAAATGATACTCTTGGACATCAAACACCATTGTACGCGCCTGCATGGA 604 Query 97223 ACCCTGACGACAAGTACACAACTGACTATGCCGTAAAAGAACTGCTCAAGCAAA--AAGT 97280 |||| | || | ||||| |||||| | |||||| | || | |||| | ||| Sbjct 603 ACCCCAAGGAAACTTACACTTCTGACTTCGGAGTAAAATACTTGTT--AGCACAGGGAGT 546 Query 97281 ACCTTCCAACAAAATTGTAGTTGGAGTCGCCATGTACGGCAGAGGGTGGAGTGGTGTGCA 97340 | | || || |||||||| || || |||||||| || | || |||| ||| || || Sbjct 545 GAATCCTAAGAAGATTGTAGTAGGTGTTGCCATGTATGGTCGTGGTTGGACTGGAGTTCA 486 Query 97341 CGATTACAAGAACAATAACGTATTTACGGGCGTCGCCACAGGTCCGGTAAAAGGTACATG 97400 |||||| | |||| || || || ||| ||| || || || || || ||||| || Sbjct 485 TGATTACGAAGACAACAATCCCTTCACAGGCAACGCTACTGGACCTGTCAAGGGTACTTG 426 Query 97401 GGAAAACGGTGTCGTCGATTATAGGCAAGTT 97431 | || |||| || ||||| || ||| || || Sbjct 425 GCAAGACGGAGTGGTCGACTACAGGGAAATT 395 >seq234333 Length=992 Score = 116 bits (128), Expect = 4e-21 Identities = 89/103 (86%), Gaps = 3/103 (3%) Strand=Plus/Minus Query 60047 AACGTTTATGAAAAAT--TTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGAC 60104 ||| | ||| ||||| ||||||| |||| ||||||||||||| ||||||||||||||| Sbjct 857 AACTTATATAAAAAAAGATTTCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGAC 798 Query 60105 AGGCGGACATACTCACCACTATACTACCGAGGAT-TGAATATA 60146 |||||| ||||| |||||||||||||||||||| |||| ||| Sbjct 797 AGGCGGGGATACTTACCACTATACTACCGAGGATATGAACATA 755 >seq37844 Length=1442 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 ||||||| | |||||| ||||| ||||| || ||| || ||||||||||| || || Sbjct 284 CCTCCTCGGAGACGCAATACCAAGTGCAAAGTAGACTCTTTCTGAATATTGTAGTCGGCG 225 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 ||||| || | || || ||||||||||||||||| || || || || ||||| | || Sbjct 224 AGAGTACGACCATCCTCCAGCTGCTTACCAGCGAAAATTAGACGTTGTTGGTCTGGAGGA 165 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 43136 | | ||| ||||| ||| || ||| | | | | ||||| | ||| || Sbjct 164 ATACCCTCTTTGTCTTGGATCTTGGCTTTAACATTTTCAATAGTGTCCGAAGGTTCAACT 105 Query 43137 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || | ||||| ||||| || || || |||||||||||||| ||||| Sbjct 104 TCTAATGTGATTGTTTTCCCTGTGAGTGTCTTTACAAAGATCTGCAT 58 >seq2515 Length=4501 Score = 105 bits (116), Expect = 8e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 |||| ||| | |||||||||| ||||||||||| || ||||||| || || || | Sbjct 3681 CGCAGCACAAGATGCAATGTGGATTCCTTTTGAATGTTATAATCAGACAATGTACGTCCA 3622 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088 || ||||||||||||||||| || || | ||| |||||||| | || | | ||||| Sbjct 3621 TCTTCTAGCTGCTTACCAGCAAAGATCAATCGTTGCTGGTCTGGTGGAATACCTTCCTTA 3562 Query 43089 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 43148 || ||| || ||| | | | | || || | |||||| || | || ||| Sbjct 3561 TCTTGGATCTTAGCTTTTACATTTTCAATAGTATCAGAGGCTTCCACCTCAAGGGTAATG 3502 Query 43149 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184 ||||| ||||| || ||||| || || ||||||||| Sbjct 3501 GTTTTACCCGTAAGGGTCTTGACGAAAATTTGCATT 3466 >seq177858 Length=921 Score = 102 bits (112), Expect = 9e-17 Identities = 68/76 (89%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 |||| |||| ||||||||||||| ||||||||||||||||||||| ||||| |||||| Sbjct 417 TCTCTCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACT 476 Query 60125 ATACTACCGAGGATTG 60140 |||||||||| ||||| Sbjct 477 ATACTACCGAAGATTG 492 >seq53601 Length=450 Score = 100 bits (110), Expect = 3e-16 Identities = 67/75 (89%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123 ||||| |||| ||||||||||||| ||||||||||||||||||||| ||||| ||||| Sbjct 198 TTCTCTCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCAC 257 Query 60124 TATACTACCGAGGAT 60138 ||||||||||| ||| Sbjct 258 TATACTACCGAAGAT 272 >seq53602 Length=266 Score = 96.9 bits (106), Expect = 4e-15 Identities = 62/68 (91%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 60071 CGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTA 60130 |||| ||||||||||||| ||||||||||||||||||||| ||||| |||||||||||| Sbjct 6 CGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTATACTA 65 Query 60131 CCGAGGAT 60138 |||| ||| Sbjct 66 CCGAAGAT 73 >seq218814 Length=373 Score = 95.1 bits (104), Expect = 1e-14 Identities = 63/70 (90%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 60071 CGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTA 60130 |||| ||||||||||||| ||||||||||||||||||||| ||||| |||||||||||| Sbjct 6 CGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTATACTA 65 Query 60131 CCGAGGATTG 60140 |||| || || Sbjct 66 CCGAAGACTG 75 >seq111469 Length=1218 Score = 95.1 bits (104), Expect = 1e-14 Identities = 63/70 (90%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 60071 CGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTA 60130 |||| ||||||||||||| ||||||||||||||||||||| ||||| |||||||||||| Sbjct 6 CGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTATACTA 65 Query 60131 CCGAGGATTG 60140 |||| || || Sbjct 66 CCGAAGACTG 75 >seq82191 Length=323 Score = 95.1 bits (104), Expect = 1e-14 Identities = 61/67 (91%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 60071 CGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTA 60130 |||| ||||||||||||| ||||||||||||||||||||| ||||| |||||||||||| Sbjct 6 CGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTATACTA 65 Query 60131 CCGAGGA 60137 |||| || Sbjct 66 CCGAAGA 72 >seq55701 Length=1651 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015 ||| || || | |||| ||| || ||||| || ||||| |||||||| || || | Sbjct 297 TCCACCCCTAAGGCGCAGCACTAAGTGCAAAGTTGATTCCTTCTGAATATTATAGTCTGA 356 Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 || || ||| | || ||||| ||||| || ||||| || |||| || || || | || Sbjct 357 CAATGTACGCCCATCTTCTAGTTGCTTTCCGGCGAAAATTAGTCTTTGTTGATCTGGAGG 416 Query 43076 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT-CGCCACCGTGTCGCTCGATTCCA 43134 | || ||| |||||| ||| | |||| | ||| | | | || || | ||||| Sbjct 417 AATGCCCTCTTTGTCC-TGAATCTTTGCCTTTACGTTCTCGATTGTATCAGAAGCTTCCA 475 Query 43135 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | || | ||||||||||| || |||| || ||||| ||||||||||| Sbjct 476 CTTCCAATGTGATGGTTTTCCCGGTTAAGGTTTTTACGAAGATTTGCAT 524 >seq54613 Length=3623 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 ||||||| | ||||| |||| ||| | ||| || ||||||||||| || |||| Sbjct 3572 CCTCCTCGCAGACGCAGTACCAGATGAAGGGTGGATTCTTTTTGAATATTATAGTCAGAT 3513 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 || || || | || |||| ||||||||||| || || || |||||||| || | || Sbjct 3512 AGTGTGCGACCATCTTCTAATTGCTTACCAGCAAAGATAAGACGCTGCTGATCAGGTGGG 3453 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 43136 | | ||| ||||| |||||| ||| | | | | || || | ||| || Sbjct 3452 ATACCCTCTTTGTCTTGGATTTTAGCTTTTACATTTTCAATTGTATCAGAGGCTTCAACT 3393 Query 43137 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || | ||||| ||||| || || || |||||||||||||| ||||| Sbjct 3392 TCTAAAGTGATTGTTTTCCCTGTAAGTGTCTTTACAAAGATCTGCAT 3346 Score = 93.3 bits (102), Expect = 5e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 || |||||||||||||| |||| || || || | || |||| ||||||||||| || Sbjct 3077 TCTTTTTGAATATTGTAGTCAGATAGTGTGCGACCATCTTCTAATTGCTTACCAGCAAAG 3018 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112 || || |||||||| || | || | || ||| ||||| |||||| ||| | | Sbjct 3017 ATAAGACGCTGCTGATCAGGTGGGATGCCCTCTTTGTCTTGGATTTTAGCTTTTACATTT 2958 Query 43113 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 43172 | | || || | ||| || || | ||||| ||||| || || || ||||||||| Sbjct 2957 TCAATTGTATCAGAGGCTTCAACTTCTAAAGTGATTGTTTTCCCAGTGAGTGTCTTTACA 2898 Query 43173 AAGATTTGCAT 43183 ||||| ||||| Sbjct 2897 AAGATCTGCAT 2887 >seq36464 Length=373 Score = 95.1 bits (104), Expect = 1e-14 Identities = 63/70 (90%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 60071 CGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTA 60130 |||| ||||||||||||| ||||||||||||||||||||| ||||| |||||||||||| Sbjct 368 CGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTATACTA 309 Query 60131 CCGAGGATTG 60140 |||| || || Sbjct 308 CCGAAGACTG 299 >seq8828 Length=1219 Score = 95.1 bits (104), Expect = 1e-14 Identities = 63/70 (90%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 60071 CGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTA 60130 |||| ||||||||||||| ||||||||||||||||||||| ||||| |||||||||||| Sbjct 1214 CGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTATACTA 1155 Query 60131 CCGAGGATTG 60140 |||| || || Sbjct 1154 CCGAAGACTG 1145 >seq54614 Length=296 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 ||||||| | |||||| ||||| ||||| || ||| || ||||||||||| || || Sbjct 106 CCTCCTCGGAGACGCAATACCAAGTGCAAAGTAGACTCTTTCTGAATATTGTAGTCGGCG 165 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 || || || | || || |||||||||||||| || || || || || ||||| | || Sbjct 166 AGCGTACGACCATCCTCCAGCTGCTTACCAGCAAAAATTAGACGTTGTTGGTCTGGAGGA 225 Query 43077 ACGCTCTCCTTGTC 43090 | | ||| ||||| Sbjct 226 ATACCCTCTTTGTC 239 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 569274862939480