Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neruda_20aoede_20[genbank_20GCA_5F900068225.1_202017-04-25] 355,741 sequences; 337,370,441 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq105292 123 4e-23 seq55701 107 3e-18 seq54613 98.7 1e-15 seq110695 89.7 8e-13 seq110694 89.7 8e-13 >seq105292 Length=7556 Score = 123 bits (136), Expect = 4e-23 Identities = 148/201 (74%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 10493 TATTGGAGCTGGAGTAATTGACGAAGATTATAGAGGAAATGTGGGAGTAATATTATTTAA 10552 |||| |||||| || || || ||||| || | ||||| | ||||| | || || || Sbjct 201 TATTATAGCTGGTGTCATAGATGAAGACTACCGTGGAAACATTGGAGTGGTGTTGTTCAA 260 Query 10553 TCATTCTAATGAAGATTTTATAATAAATAGAGGAGATAGAATATCTCAATTAATATGTGA 10612 |||||| | |||||||||| | | || | ||| |||||||| ||||| | |||||||| Sbjct 261 TCATTCCAGTGAAGATTTTGCAGTTAAAAAAGGTGATAGAATTGCTCAACTGATATGTGA 320 Query 10613 AAAAATTTTATATCCTAAAATGTTAAAAGTCGATAGTTTATCAGAAACAAAAAGATCTGA 10672 || |||||| || || | || | |||| || | | ||||||||||||||||| || Sbjct 321 AAGAATTTTCTACCCGGATATAATTGAAGTTGACAATCTATCAGAAACAAAAAGAGGGGA 380 Query 10673 TTTTGGTTTTGGATCTACTGG 10693 ||||||||| ||||| || Sbjct 381 AGGTGGTTTTGGGTCTACAGG 401 >seq55701 Length=1651 Score = 107 bits (118), Expect = 3e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| || | || ||||| || |||||||||||||| ||||| || || || Sbjct 70 CCACCTCTCAGACGTAGTACCAGGTGCAAAGTAGATTCTTTCTGAATATTGTAGTCAGAT 129 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 ||||| | | ||| || | || |||||||||||||| | |||||||||||| || ||| Sbjct 130 AGAGTGCGTCCATCTTCAAGCTGCTTTCCAGCAAAAATAAGTCTTTGCTGATCTGGGGGA 189 Query 146171 ATTCCTTCTTTATCTTG 146187 || || |||||||| || Sbjct 190 ATGCCCTCTTTATCCTG 206 >seq54613 Length=3623 Score = 98.7 bits (108), Expect = 1e-15 Identities = 155/230 (67%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||||| || | | ||| | ||| | ||||| || || || || || || ||| Sbjct 2669 CCACCTCGCAGACGCAGTACTAGATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCAGAA 2610 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || || | || ||| |||||||| ||||||||||||||||| | ||| ||||| |||||| Sbjct 2609 AGTGTACGGCCATCTTCTAATTGCTTTCCAGCAAAAATCAAACGTTGTTGATCTGGAGGA 2550 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 || ||||| || ||||| |||||| ||| ||| ||| Sbjct 2549 ATGCCTTCCTTGTCTTGAATTTTGGCTTTTACATTTTCAATAGTATCGGAAGCTTCAACT 2490 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCATTTT 146280 || | || || |||||||| || | |||||| | || || |||||||| Sbjct 2489 TCCAAAGTAATGGTTTTACCCGTAAGTGTTTTGACAAAAATCTGCATTTT 2440 >seq110695 Length=218 Score = 89.7 bits (98), Expect = 8e-13 Identities = 94/124 (76%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 |||||||||| || | || || || || ||||| ||||| || |||||||| || | Sbjct 95 TTCCACCTCTTAGACGCAACACTAAGTGCAAAGTTGATTCCTTCTGGATATTATAGTCGG 154 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 | | || | | ||| || | ||| |||||||||||||||| |||||| ||||| |||| Sbjct 155 ACAATGTGCGCCCATCTTCCAGTTGCTTTCCAGCAAAAATCAGTCTTTGTTGATCTGGAG 214 Query 146169 GAAT 146172 |||| Sbjct 215 GAAT 218 >seq110694 Length=236 Score = 89.7 bits (98), Expect = 8e-13 Identities = 103/139 (74%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 |||||||||| | | || || || || ||||| ||||| || |||||||| || | Sbjct 53 TTCCACCTCTTAAACGCAACACTAAGTGCAAAGTTGATTCCTTCTGGATATTATAGTCAG 112 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 | | || | || ||| || | ||| |||||||||||||||| || || || || |||| Sbjct 113 ACAATGTGCGGCCATCTTCGAGTTGCTTTCCAGCAAAAATCAGCCTCTGTTGGTCTGGAG 172 Query 146169 GAATTCCTTCTTTATCTTG 146187 |||| |||||||| || || Sbjct 173 GAATACCTTCTTTGTCCTG 191 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740220114686720