Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neruda_20aoede_20[genbank_20GCA_5F900068225.1_202017-04-25] 355,741 sequences; 337,370,441 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq121238 194 1e-44 seq32923 98.7 7e-16 seq55701 87.8 1e-12 seq54613 86.0 5e-12 >seq121238 Length=2101 Score = 194 bits (214), Expect = 1e-44 Identities = 727/1120 (65%), Gaps = 35/1120 (3%) Strand=Plus/Plus Query 90774 GTTCATTGTGTTGAGCAGATCACCATTATCGGCGTCAATTTCCCATGCAAACAATCCACC 90833 |||||| | || || |||||||| ||||||||||| |||||||| ||||| | || || Sbjct 182 GTTCATGGCATTCAGTAGATCACCGTTATCGGCGTCGATTTCCCAAGCAAAGAGACCGCC 241 Query 90834 CAACTTGTTTTGATCAACGTATCTGCTTTTAGCCAAAACGGAATCAACGCTGTCAAACGT 90893 | |||||| | || || | | || | | ||| || | | | ||| | || Sbjct 242 TAGCTTGTTATTTCTTACATACTTACCCTTCTCAATAACTGATCTAGCATTATCATAGGT 301 Query 90894 GATAAGGTCGGCTTTATTTTTGT-TAAAAACATATGATGCTTCGGCAACTTTGTCAAACT 90952 | |||||| | | | | || | || || || | ||||| ||| || ||||| | | Sbjct 302 TACAAGGTCTCCAGT-TGATGGTCTGAAGACGTAAGGTGCTTGGGCGACATTGTCGTAAT 360 Query 90953 TGTACACGTACTCG--TTTAT-ATTTTCTTTT---ATTTGGCGATAGTCAACGACTCCAT 91006 | || | ||| | || | | ||| || |||| | ||||| || ||||| | Sbjct 361 GGAACTCCCACTTGCCTTGAGCAACTTCATTGGCAATTTCCCTGTAGTCGACCACTCCGT 420 Query 91007 CTTCCCACGTGCCCGTAACCGGACCGTTAGCGACACCATCAAA---ATAGTTATCACCTT 91063 ||| ||| || ||| | || || || ||||| || || || ||| || || Sbjct 421 CTTGCCAAGTACCCTTGACAGGTCCAGTAGCGTTGCCTGTGAAGGGATTGTTGTC---TT 477 Query 91064 TGTAATCAGACACGCCTGTCCAGCCGCGCCCGTACATGGCGACACCAATAATTATTTTAC 91123 ||||||| || || ||||| || || || |||||||| ||||| | | || || Sbjct 478 CGTAATCATGAACTCCAGTCCAACCACGACCATACATGGCAACACCTACTACAATCTTCT 537 Query 91124 TAGAATCAACACCTTGTTTTGTGA-GCATTTGCACGGCATGATGCGTGGTGTACAACTCG 91182 ||| || || || ||| | | | |||| || | | | ||||| || Sbjct 538 TAGGATTCACTCCCTGTGCTAACAAGTATTTT-ACTCCGAAGTCAGAAGTGTAAGTTTCC 596 Query 91183 TTCGGGTTCCATTGCGGGGCGTATAGTGTCGTTTGATAGCCCAA----ATCGGTATTTGA 91238 || ||||||||| || ||||| | || ||||||| | |||| ||| |||||| Sbjct 597 TTGGGGTTCCATGCAGGCGCGTACAATGGTGTTTGAT-GTCCAAGAGTATC---ATTTGA 652 Query 91239 CCAAGCTCCTTTAAAATCGTAAGTCATGACATATATTTTACTCAAAAACTTTTGTGCAGC 91298 ||| || ||||| || |||||| |||| | | || | | || | | ||||| || Sbjct 653 CCAGGCACCTTTGAAGTCGTAACTCATCAAGAAAATATGATCCATATAATTTTGAGCCTT 712 Query 91299 GTCATAATCGACAAGTTCGATCTTGTCATAACCGGCACCGATTGCGCTTGTCAATTCGTA 91358 | || || |||| || ||| || || | || || | || || || |||||||| Sbjct 713 GCTGTAGTCAACAACTTGGATTTTATCCCACCCAGCGCTAATAGCAGAAGTTAATTCGTA 772 Query 91359 CACTTTACCTGTTTGTGCTTGCAAATCATCCAACATGTCACGCAACTCTTTTAGCAAAAC 91418 ||||| | | ||| | ||||| | ||| ||||| || ||||| | |||| Sbjct 773 TTTCTTACCATTCTTAGCTGAGAGTTCATCGAGCATCTCACGTAATTCTTTCATCAAACT 832 Query 91419 AATGTATGTAGCAGCGTCGCGTTTCGGATCGCCAATGGCCGGATTAGCGCCTTTACCGCC 91478 | || | || | || || ||| |||| | | || ||||||||||| || || Sbjct 833 TACATAACAATCACCATC---TTCTGGACTCCCAAGGTCAGGGTTAGCGCCTTTGCCACC 889 Query 91479 CGGAAATTCCCAATCAATATCTACACCGTCAAAAAATTTCCAAACTTGCAAAAATTCTTT 91538 || || |||||||| ||||| ||||| || || |||||||| | | ||| || || Sbjct 890 AGGGAACTCCCAATCGATATCAACACCATCGAAGAATTTCCATGTTAAAAGAAACTCCTT 949 Query 91539 AACCGAATCAACGAA-CACGTT-TCTTCG-TTTGACATCGTGCATAAAATAGAACGGGTC 91595 || || | || || | ||| |||| | |||| || || | ||| |||| || || Sbjct 950 GACTGACTGCACAAATCGTGTTCTCTTAGATTTGTCAACG---AAAAAGAAGAATGGATC 1006 Query 91596 CGACAAAGTCCAGCCACCGATGGACGGTAAAACTTTTAAATGCGGGTTGGCCAACTTGGC 91655 | | ||||| ||||| || || || | || || |||| ||||| || | || | Sbjct 1007 AGCAAGCGTCCACCCACCAATAGAGGGAAGAATCTTCAAAT-CGGGTCGGGCTTGTTTGA 1065 Query 91656 G-GCCATTATCTGACCAAAGTTGCCCTTGTAAGGCTCGTTCCAAGCGGATACACCTTTTT 91714 | | ||| | || ||||| ||||| ||||| || || ||||| | || | ||| ||| Sbjct 1066 GAGACATCAATTGGCCAAAATTGCCTTTGTAGGGTTCATTCCATGAAGACAATCCTCTTT 1125 Query 91715 GTGGTTTTTGTATGGCTGCCCACGGATCGTGTATGGAAACTTTAAAATCATCGCGTCCTT 91774 |||||||||||| |||||||| ||||| || || || ||||| ||||| ||||| || Sbjct 1126 GTGGTTTTTGTAATGCTGCCCATGGATCATGGATTGAGACTTTGAAATCCTCGCGGCCGC 1185 Query 91775 TGCACGATCGTTGCAAATTTTCAAAACTACCAGGTATTGTTTTGAGGGCATCGTTTAATC 91834 | || ||||| || || || ||||| || || ||| | | || || | | Sbjct 1186 TACAAGATCGCTGTAATGCTTGGAAACTGCCTTCGATCTCTTTTAAGCTGTCATTGATAC 1245 Query 91835 CATCGCCTCCGCAAATGGGTATAAAACCGTACAACAGATG 91874 | || || |||||||| || || || ||||| | ||||| Sbjct 1246 CGTCACCGCCGCAAATTGGAATGAAGCCGTAGAGTAGATG 1285 >seq32923 Length=5192 Score = 98.7 bits (108), Expect = 7e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 20099 ACATTTTGCACATAATCACGCCCTTTGACAAGCAGCAAGTATCCACAGTTACTAAACCAA 20158 || || || ||||| || || || ||||| ||| | | ||| | || ||||| Sbjct 1512 ACCTTCTGGACATACTCTCGGCCCTTGACCAGCTGAACGTAGGCGCACCGGTCGAACCAG 1571 Query 20159 CGTGCGTGTTGTTCCCATGGAATGTCATCATTTTCCCAATCTTTAAGGCCGCCATTGCAA 20218 || ||||| || ||||| || | ||| || || ||||| || || |||||||| | || Sbjct 1572 CGCGCGTGCTGCTCCCACGGCACGTCGTCGTTCTCCCAGTCCTTGAGGCCGCCGTCACAG 1631 Query 20219 TAAAAACACAAAGTTTTATCACCGCGCGACGTATAATAAAATCCCGCTTCGGCCAATTCA 20278 || || ||| |||||| || || | || || | |||||||||||||| | ||| Sbjct 1632 TAGAAGCACTTAGTTTTGTCGCCCTGGCCGGTGTAGAAGAATCCCGCTTCGGCGAGTTCC 1691 Query 20279 TCGGGCCTTTGCTTCATGCTGCGCGGCCA 20307 |||||| | ||||||| ||||| ||||| Sbjct 1692 TCGGGCTTCTGCTTCAAACTGCGAGGCCA 1720 >seq55701 Length=1651 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 ||||||| ||| | || |||||||| ||||| |||||||| | | || | |||| Sbjct 85 AGTACCAGGTGCAAAGTAGATTCTTTCTGAATATTGTAGTCAGATAGAGTGCGTCCATCT 144 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 || | || || || ||| | ||||||||||| ||||| ||| | ||| || ||||| Sbjct 145 TCAAGCTGCTTTCCAGCAAAAATAAGTCTTTGCTGATCTGGGGGAATGCCCTCTTTATCC 204 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 ||||| ||| || | | ||| || ||| | || ||| | || || | Sbjct 205 TGAATTTTCGCCTTAACATTTTCAATTGTATCAGAAGCTTCCACTTCCAAAGTAATAGTC 264 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 ||||| || | ||| |||||||||||||||||| Sbjct 265 TTGCCTGTAAGTGTCTTTACAAAAATTTGCATT 297 >seq54613 Length=3623 Score = 86.0 bits (94), Expect = 5e-12 Identities = 150/216 (69%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 ||||| | ||||| || || || ||||| ||||||||||| | | ||| | |||| Sbjct 2654 AGTACTAGATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCAGAAAGTGTACGGCCATCT 2595 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 || ||||| || || ||| | || | | ||||||||| || | ||||||||| || Sbjct 2594 TCTAATTGCTTTCCAGCAAAAATCAAACGTTGTTGATCTGGAGGAATGCCTTCCTTGTCT 2535 Query 18234 GCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCT 18292 ||||| | || || || | | ||| ||| || | || ||| | || ||| | Sbjct 2534 TGAATTT-TGGCTTTTACATTTTCAATAGTATCGGAAGCTTCAACTTCCAAAGTAATGGT 2476 Query 18293 TTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTT 18328 ||| || || | |||||| |||||||| |||||||| Sbjct 2475 TTTACCCGTAAGTGTTTTGACAAAAATCTGCATTTT 2440 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||| || || | ||||||| ||||| || |||||||||||||| || ||||| | Sbjct 3572 CCTCCTCGCAGACGCAGTACCAGATGAAGGGTGGATTCTTTTTGAATATTATAGTCAGAT 3513 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | ||| || |||||| ||||| || || ||| ||||||| | || ||||| || Sbjct 3512 AGTGTGCGACCATCTTCTAATTGCTTACCAGCAAAGATAAGACGCTGCTGATCAGGTGGG 3453 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | || || || || |||| | || || || | | ||| || ||| || || Sbjct 3452 ATACCCTCTTTGTCTTGGATTT-TAGCTTTTACATTTTCAATTGTATCAGAGGCTTCAAC 3394 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||| | ||||| |||| || || | ||| |||||||| || ||||| Sbjct 3393 TTCTAAAGTGATTGTTTTCCCTGTAAGTGTCTTTACAAAGATCTGCAT 3346 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 377699318643045