Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neruda_20aoede_20[genbank_20GCA_5F900068225.1_202017-04-25] 355,741 sequences; 337,370,441 total letters Query= NC_003094.2 Length=130759 Score E Sequences producing significant alignments: (Bits) Value seq121238 257 1e-63 >seq121238 Length=2101 Score = 257 bits (284), Expect = 1e-63 Identities = 649/982 (66%), Gaps = 25/982 (3%) Strand=Plus/Plus Query 35873 TTAGCAATCTGTCTGTAGTCGACCACGCCGTTTTCCCATGTACCCGTGATCGGTCCGACG 35932 || ||||| | |||||||||||||| |||| || ||| |||||| ||| ||||| Sbjct 390 TTGGCAATTTCCCTGTAGTCGACCACTCCGTCTTGCCAAGTACCCTTGACAGGTCCAGTA 449 Query 35933 GCTACGCCACTGAATGGATTGTCACTGTTGTAGTTGTGGACGCCCGTCCAACCGCGGCCG 35992 || ||| |||| ||||||| | ||| | || || || |||||||| || || Sbjct 450 GCGTTGCCTGTGAAGGGATTGTTGTCTTCGTAATCATGAACTCCAGTCCAACCACGACCA 509 Query 35993 TACATTGCTACGCCCAACACGAGtttttttGGATTCACTCGTTGCGCGAGCAAAGCGTCC 36052 ||||| || || || | || | || || |||||||||| || || | ||| | Sbjct 510 TACATGGCAACACCTACTACAATCTTCTTAGGATTCACTCCCTGTGCTAACAAGTATTTT 569 Query 36053 ACGGCCACGTTGGCGGTGTACGGTTCGTTAGGTTTCCACGCGGAACCGTACAGTGCCGTC 36112 || | | || | ||||| | ||| || || ||||| || | |||||| || || Sbjct 570 ACTCCGAAGTCAGAAGTGTAAGTTTCCTTGGGGTTCCATGCAGGCGCGTACAATGGTGTT 629 Query 36113 TGATGACCGAGATCGGTATTAGACCAAGCTCCTTTGAAATCATAACTCATCACGAAAATT 36172 ||||| || ||| ||| ||||| || |||||||| || |||||||||| |||||| Sbjct 630 TGATGTCCAAGAGTATCATTTGACCAGGCACCTTTGAAGTCGTAACTCATCAAGAAAATA 689 Query 36173 TTATCTAAATACTGTTGTGCTCGGTCGTAATTAACCGCGGCGATCTTGTCTATGCCAGCG 36232 | ||| | ||| | ||| || | ||| | ||| | ||| || || |||||| Sbjct 690 TGATCCATATAATTTTGAGCCTTGCTGTAGTCAACAACTTGGATTTTATCCCACCCAGCG 749 Query 36233 CTAATCGCTGTGGTGAGTTCTAAAGT---ACGATTCGTTTGTATTTGA-ACTTGATCGAG 36288 ||||| || | || | ||| | | || |||| | | ||| | || |||||| Sbjct 750 CTAATAGCAGAAGTTAATTCGTATTTCTTACCATTCTT----AGCTGAGAGTTCATCGAG 805 Query 36289 CATGGCGCGCAATTCGCCCAATAAAGCGATATACGTGTTATTGTCGCGTTCCACATCGCC 36348 ||| | || ||||| || ||| | ||| | | || ||| | || Sbjct 806 CATCTCACGTAATTCTTTCATCAAACTTACATAACAATCACCATC---TTCTGGACTCCC 862 Query 36349 AACGTTTGGATTGGCGCCTTTGCCGCCCGGAAATTCCCAATCAATATCGATGCCGTCGAA 36408 || || || || ||||||||||| || || || |||||||| ||||| | || ||||| Sbjct 863 AAGGTCAGGGTTAGCGCCTTTGCCACCAGGGAACTCCCAATCGATATCAACACCATCGAA 922 Query 36409 AAATTTCCATGTCAACACAAATTCACGCACGGATTCGACAAAAATTTGTCGCGTTCGCGC 36468 ||||||||||| || | ||| || || || | ||||| ||| |||| | Sbjct 923 GAATTTCCATGTTAAAAGAAACTCCTTGACTGACTGCACAAA------TCGTGTTCTCTT 976 Query 36469 A---TCGT----GCATATGATAGAAGGGATCGGACAGTGTCCAACCGCCGATTGATGCCA 36521 | | || | | | || |||| ||||| | || ||||| || || || || | | Sbjct 977 AGATTTGTCAACGAAAAAGA-AGAATGGATCAGCAAGCGTCCACCCACCAATAGAGGGAA 1035 Query 36522 ACACTTTTAGATTGGGATTGGCCAATTTTGCTGCCATTAATTGACCAAAATTGCCTTTGT 36581 | || | || ||| ||| ||| | ||| ||||| |||||||||||||||| Sbjct 1036 GAATCTTCAAATCGGGTCGGGCTTGTTTGAGAGACATCAATTGGCCAAAATTGCCTTTGT 1095 Query 36582 AGGGTTCGTTCCATGCGCTAACGCCTGTTTGTGGTTTTTGGAGCGCCGCCCACGGATCGT 36641 ||||||| ||||||| | ||| ||||||||||||| | || ||||| ||||| | Sbjct 1096 AGGGTTCATTCCATGAAGACAATCCTCTTTGTGGTTTTTGTAATGCTGCCCATGGATCAT 1155 Query 36642 GTATGGAAACTTTAAAATTGTCCCTGCCAGCGCACGATCTTTGCAACGCTTCAAAACTCC 36701 | || || ||||| |||| || | ||| || |||| || || |||| ||||| | Sbjct 1156 GGATTGAGACTTTGAAATCCTCGCGGCCGCTACAAGATCGCTGTAATGCTTGGAAACTGC 1215 Query 36702 CCGTGATAGATTTTAAACTGTCGTTTATACCGTCACCGCCGCAAATCGGTATAAATCCGT 36761 | ||| |||||| ||||| || |||||||||||||||||||| || || || |||| Sbjct 1216 CTTCGATCTCTTTTAAGCTGTCATTGATACCGTCACCGCCGCAAATTGGAATGAAGCCGT 1275 Query 36762 ATAAAATGTGCGAAAGGTTCGGCGTGGGCACTTTGTCCACGGGAAAAGATCGACCGTAAA 36821 | | | || | ||| || || | || | ||||| || || | | |||| Sbjct 1276 AGAGTAGATGAGTAAGATTAGGTATAGGTATACGATCCACAGGGAATTTCCTAGGATAAA 1335 Query 36822 CGCCCCATTCGACAAAATAGGC 36843 | |||||||| || ||||| || Sbjct 1336 CACCCCATTCTACGAAATAAGC 1357 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 416490403922720