Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neruda_20aoede_20[genbank_20GCA_5F900068225.1_202017-04-25] 355,741 sequences; 337,370,441 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq7548 524 1e-143 seq139650 100 4e-16 seq52122 95.1 2e-14 seq105385 86.0 8e-12 >seq7548 Length=2633 Score = 524 bits (580), Expect = 1e-143 Identities = 1214/1806 (67%), Gaps = 59/1806 (3%) Strand=Plus/Minus Query 62028 ATTTTATCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAG 62087 |||||| | ||||| | ||||| || || | | | ||| ||||| || |||| ||| Sbjct 2257 ATTTTACCTTTGTCTACGGTGAACTGTATAGCATTTGCTGCCGGTTTTGTGCGTAAGTAG 2198 Query 62088 TACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAA 62147 |||||||| ||||||| || | |||| ||| ||||| || ||||||||| | Sbjct 2197 TACATTCCTGTTTTTAAGCCCATTTTCCAAGCGTGGAAATGAATCGACGTTAGTTTCCCA 2138 Query 62148 TAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTG 62207 || | || | || | ||| || || | |||||||||||| || ||||| ||||| || Sbjct 2137 TAGTTAGGCTTAGCAACATGTATGTTAAAAGATTGACTTTGGTCTATGAAAGCTCCTCTA 2078 Query 62208 TCTGCAGCCATTTTTATGATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATA-AACTCG 62266 || || ||||||| |||| ||| || || ||| ||||| | ||||| || || || Sbjct 2077 TCAGCCGCCATTTGTATGGACGTTTTCAATGAAATCTCCCATACGGTTTTGTACAAATCT 2018 Query 62267 CTTAATATCTTCTGGAAGGTTTGTA--TTCT-GAATGGATCCACCATCTACCATAATCCT 62323 |||| | |||| |||| ||| | |||| | || ||||| | | ||| Sbjct 2017 CTTATT-TCTTTAGGAATTTTTTCAATTTCTTGTATAGATCCGTTGTTGTATAAAATAAG 1959 Query 62324 ATTCTTGATCTCATCATTCCATAATTTT-CTCTCGGTTAAAACTCTAAGGAGATGCGGGT 62382 ||| || || || |||| |||||| | |||| ||| ||| || | || || || | | Sbjct 1958 ATTTTTCATATCTTCATCCCATAAATCGGCTCT-GGTCAAATCTGTCAGAAGGTGATGAT 1900 Query 62383 TAACTACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTT 62442 | ||||| | ||||||||||| || ||||| | |||||| || ||| | |||| Sbjct 1899 TCACTACAGGAAATTCTCCAGATAAGACTCTTCTTTGGTAAATGTTTGATGTAAAGGGTT 1840 Query 62443 CCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCA 62502 | | |||||| | || || | |||||| || || || || || |||||||| || | || Sbjct 1839 CAAAAGACTCAGTGTTACCAAGAATTTGTGCTGTAGAGGCGGTTGGCATAGGAGCTAACA 1780 Query 62503 ATAAACTATTTCTAAGACCGTATGTTCTG--ATTTTATCTTTTAGATGTTCCCAATTCCA 62560 ||| | ||| | | ||| ||||| || ||||| ||||| || |||| | ||| Sbjct 1779 ATAGAGAATTGCGCAAACC--ATGTTTTGCTATTTTTTCTTTGAGGGCAGCCCAGTCCCA 1722 Query 62561 AAGATCCGACGG-------TACAACANNNNNNNNNNNATATTGTAGAATACCGTTACTGG 62613 || |||| || | | ||| ||||||||| ||||| | || Sbjct 1721 CAGTTCCGTAGGAGTTTTGTCCCACATATC-------ATATTGTAGGATACCTTGGCTCA 1669 Query 62614 C-GTACGATCCTACATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCC 62672 | | || ||| |||| ||| |||| ||||| || || |||| || |||||| || Sbjct 1668 CTGGACTC-CCTTCATAAGTACTGTATGCACCTTCTTTTTCTGCTAATTCACAACTAGCT 1610 Query 62673 TCTAATGCACCGTAATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGG 62732 ||||||||||| |||||||| |||||||| || | | ||| || | ||||| | Sbjct 1609 TCTAATGCACCATAATAAATAGTTTCAAATATTTGTTGATTAAGGAGTATTGCTTTCTCA 1550 Query 62733 CTATCAAATGGATAATTTAAGAGA-ATAAACGCGTCCGCTAATCCTTGAACACCAATACC 62791 || || | || || | | | | | ||| | || || | ||| |||||||||||||| Sbjct 1549 CTTTCGTAAGG-TATTCTCATCAACACAAATGTATCTGCCATTCCCTGAACACCAATACC 1491 Query 62792 GATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATC 62851 |||||| | || || |||| || ||| ||||| || | ||||||| | |||| ||| Sbjct 1490 GATAGGCCGGTGCTTCATATTTGAAGTTTTTGCTTCAGGGACAGGATAAAAGTTAACATC 1431 Query 62852 TATAATTTTATTGAGATTTC---TGACAATTACTTTGACCACATCCTTCAGTTTGAGAAA 62908 || | ||| || | |||| |||||||| | ||| || || | ||| ||| Sbjct 1430 AATGACTTTGTTTAAATTTTGAGTGACAATTTTTGTGATT---TCTTTTAATTTTTTAAA 1374 Query 62909 ATCAAATCGCCCATCTATTACAAACATGTTCAATGCAACAGATGCCAGATTACACACGGC 62968 || |||| || || | ||||||||||| | ||| | || || ||||| || || || Sbjct 1373 ATTAAATTGCTTATGTTCAACAAACATGTTAAGTGCTATGGAAGCAAGATTGCATACTGC 1314 Query 62969 TACCTCATTAGCATCCGCA---TATTGTATTATCTCAGTGCAAAGATTACTACACTTGAT 63025 || |||| | || | | ||||| | | ||||||||||||||| ||||| || || Sbjct 1313 CACTTCAT---CTTCTGAAGTGTATTGCACAACCTCAGTGCAAAGATTGCTACATTTAAT 1257 Query 63026 AGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGG 63085 ||| || | ||| | |||||||||||| ||||||| ||||||||||| | ||| |||| Sbjct 1256 AGTGCCAAGATTCTTTTGATTACTCTTCCTGTTACAAGCATCCTTATACAACATGTATGG 1197 Query 63086 AGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTAT 63145 |||||||| || | || | ||||||||| | ||||| | || |||| | | | Sbjct 1196 TGTACCAGTCTCCACTTGGGCTTCTATAATTGACTTCCATAACTCTTGAGCTCTGACTT- 1138 Query 63146 AGATTTGTATCTCCTTTCTCTTT--CGTATAGAGTATACAATCGTTCGAACTCGTCTCCC 63203 | ||| || || ||| ||||| | ||| | ||| | | ||| ||||| ||||| Sbjct 1137 -GTTTTATAAATCGTTTTTCTTTTTCATATTTGGCATATAGTTCTTCAAACTCCTCTCCA 1079 Query 63204 CAAACATTGTCCAATCTAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCC 63263 | | | | | |||||| |||| |||||||| | ||| || |||||| Sbjct 1078 TAGCAGTCAGCGAGACCAGGACAGTCATGAGGACACATTAGACTCCAAACT---TCATCC 1022 Query 63264 TTC---ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTT 63320 || |||| ||||||||| ||||| || ||||| | ||| ||| || ||||| | | Sbjct 1021 TTTTCTACTCTTTTCATAAACAGATCTGGTATCCATAAAGCATAAAACAGTTCTCTAGCT 962 Query 63321 CTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGC 63380 || ||| || || ||||| ||||| | | ||| | |||| | | || || | |||| Sbjct 961 CTCATTTCTTCCTTACCTGTGTTCTTCCTTAAATCTAAGAACTCAAATATGTCTGCATGC 902 Query 63381 CACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTAT 63440 || || || ||||| || || | | || || ||||||||||| || ||||||| ||| Sbjct 901 CAAGGCTCTAAGTAAATTGCAAATGCACCGGGACGTTTGTTTCCACCTTGATCTACATAT 842 Query 63441 CTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTA 63500 || || || || ||||| |||||||||||||| | | ||| ||||| | ||||| || Sbjct 841 CTGGCAGTATTGTTATACACTCTCAACATTGGCACTAGACCATTTGAGACCCCATTAGTG 782 Query 63501 CCGGAGATATAGCCTCCACTGGCACGAAT---ATTACTAATTGATAGACCTATTCCCCCT 63557 || | ||||| || ||| | || || || || || |||||| || || Sbjct 781 CCAGCTATATAAGAACCCTGGGCTCTGATGCAATGTGTA--TG-TAAACCTATGCCACCA 725 Query 63558 GCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCA 63617 || |||||| ||||| || ||| ||||||| || ||| | |||||||| |||||||| Sbjct 724 GCAGATTTAGAAATTAAAGCACATTGTTTTAAAGTATCAAAAATGCCTTCAATGCTATCG 665 Query 63618 TCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAAT 63677 || |||| | || || ||| || | || | || | || | || || Sbjct 664 TCTTTCATAGCTATAAGGAAGCAGGAGGAAAGCTGTGGCCGCGGTGTAGCTGCTGAGAAC 605 Query 63678 AAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCT 63737 | ||||| || || ||||| |||| || || | | ||| || || | || || Sbjct 604 AGTGTAGGGCTTGCATGTGTAAAATATTTCTCTGACATCATATTATAAGTATTGATTGCA 545 Query 63738 GAGTCTATATC-CCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCT 63796 || || || || | ||||| |||| | ||| | ||||| |||||| |||||||| Sbjct 544 CTATCAATGTCTTCACCG-TGAATGCCTATGGAGACTCTCATTAGCATGTGTTGAGGTCT 486 Query 63797 TTCAAC 63802 |||||| Sbjct 485 TTCAAC 480 Score = 87.8 bits (96), Expect = 2e-12 Identities = 69/83 (83%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 63807 TTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTAT 63866 || |||||||| || ||||| || ||| ||||||||||||| |||||||||||||||||| Sbjct 209 TTATTGTTTATCTTTAACAAATATGATCTTTCCAAAGTTTTGAAACCAAAATAGTTGTAT 150 Query 63867 GAAAAGTCTCGTTCGTAAATAAT 63889 ||| |||| || |||| ||| Sbjct 149 TTAAAATCTCTGTCATAAACAAT 127 >seq139650 Length=2376 Score = 100 bits (110), Expect = 4e-16 Identities = 245/369 (66%), Gaps = 7/369 (2%) Strand=Plus/Minus Query 155252 TTATGACTCCA--ATTAATCCCATGTTAGCGGAATCATGTGATTCTGTCAATAAGGCGTT 155309 ||||||||||| |||| || |||||||| ||| | || | || || | | ||| | Sbjct 489 TTATGACTCCAGTATTA--CCTATGTTAGCTGAAGCTTGCAAGTCGGTTGAAATGGCTAT 432 Query 155310 TAAAAAATTTCCATCAGGAATGTTTGCGGAAGTCAAATACGATGGTGAAAGAGTACAAGT 155369 ||||||| |||| || |||||| | ||| | ||||| ||||| ||| | || ||||| Sbjct 431 GAAAAAATGTCCAAATGGCATGTTTTCTGAAATAAAATATGATGGAGAACGGGTTCAAGT 372 Query 155370 TCATaaaaaaaaTAACGAGTTTGCATTCTTTAGTAGAAACATGAAACCAGTACTCTCTCA 155429 |||||||| || ||||| || ||| | | | ||||||||| | |||| Sbjct 371 CCATAAAAAGGGAAATGAGTTCAAATATTTTTCCCGTGCCTTAAAACCAGTAATGGCTCA 312 Query 155430 TAAAGTGGATTATCTCAAAGAATACATACCGAAAGCATTTAAAAAAGCTACGTCTATCGT 155489 ||||| | || | ||||| || |||| || |||||| |||| | | | Sbjct 311 CAAAGTTAGTCATTTTAAAGATTATTTACCTAAGGCATTTCCTAAAGGAGATGATTTGAT 252 Query 155490 ATTGGATTCTGAAATTGTTCTTGTAGACGAACATAATGTA---CCGCTACCGTTTGGAAG 155546 |||||| ||||| | || | ||||| | ||| || | || | || ||||| | Sbjct 251 TTTGGATGCTGAAGTACTTATGGTAGATGTCAATACTGGAAAGCCATTGCCTTTTGGTAC 192 Query 155547 TTTAGGTATACACAAAAAGAAAGAATATAAAAACTCTAACATGTGTTTGTTCGTGTTTGA 155606 |||||||| |||||| | ||||| |||| | || | | ||||| | | ||||| Sbjct 191 ATTAGGTATCCACAAACAATCAGAATTTAAAGATGCTCAAGTTTGTTTATATATATTTGA 132 Query 155607 CTGTTTATA 155615 || ||||| Sbjct 131 TTGCTTATA 123 >seq52122 Length=5755 Score = 95.1 bits (104), Expect = 2e-14 Identities = 78/95 (82%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 34068 TTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTC 34127 ||||||| || |||||||| | |||||||| ||||| || || ||||||||||| | | Sbjct 5436 TTAGATAAGTCTACTTCTTCTGCAGTCCAAAAGGATGCTTCAGCTTTTTTATACATCTGC 5377 Query 34128 CAGATGTCATGATATTGGATTGGGAAAATAACAAA 34162 || ||||| |||||||||||||||| ||||| || Sbjct 5376 CAAATGTCTGGATATTGGATTGGGAATATAACGAA 5342 >seq105385 Length=1203 Score = 86.0 bits (94), Expect = 8e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 64017 TTTTTTGTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAATGGCATAATCC 64076 || || || || || |||| ||| ||||| ||||||||||| || | ||| |||||||| Sbjct 558 TTCTTGGTGTCTTTATGTAAATTGGATATTGCTATTCTGGCAGCCAAAATAGCATAATCA 617 Query 64077 GGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTT 64136 ||||| | || || ||| ||||| ||||| || || ||| | || | || | ||| Sbjct 618 GGATGATCAGTGGTCTTAGTAGCTGCAATTTCAGCAGCAAGATTATCAAGCTCAGCAGTT 677 Query 64137 GTTACTCCATTATATATTCC 64156 ||||| ||| |||||| || Sbjct 678 GTTACACCAGAATATATGCC 697 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627016950714480