Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neruda_20aoede_20[genbank_20GCA_5F900068225.1_202017-04-25] 355,741 sequences; 337,370,441 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq7548 524 7e-144 seq49004 93.3 4e-14 seq52122 86.0 6e-12 >seq7548 Length=2633 Score = 524 bits (580), Expect = 7e-144 Identities = 1195/1776 (67%), Gaps = 29/1776 (2%) Strand=Plus/Minus Query 36790 TCAACTGTGAATTTTATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTT 36849 || || ||||| | ||||| ||||| ||||| |||||| | | || |||||||| ||| Sbjct 2245 TCTACGGTGAACTGTATAGCATTTGCTGCCGGTTTTGTGCGTAAGTAGTACATTCCTGTT 2186 Query 36850 TTTAGCCCCAATCTCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTA 36909 |||| |||| | |||| ||| ||||| || || ||||| | || |||| ||| Sbjct 2185 TTTAAGCCCATTTTCCAAGCGTGGAAATGAATCGACGTTAGTTTCCCATAGTTAGGCTTA 2126 Query 36910 TCTATATATATTGTCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATT 36969 | | || ||| | | ||||||||||| ||||| || || ||||| || || |||||| Sbjct 2125 GCAACATGTATGTTAAAAGATTGACTTTGGTCTATGAAAGCTCCTCTATCAGCCGCCATT 2066 Query 36970 TCTAAAATACATTTTTGA-GATATCTCCCAAACCGTTTTATATATTTGTTTTATATTATC 37028 | || || |||| | || |||||||| || ||||| || | | | |||| || | Sbjct 2065 TGTATGG-ACGTTTTCAATGAAATCTCCCATACGGTTTTGTACAAATCTCTTAT-TTCTT 2008 Query 37029 TGGTAAATCTA--AATGT--TGAATAGAACCATTATGTAACACAATTGTATTCTTTATGT 37084 | | || | | ||| | || ||||| || || | | | ||| ||| || || | Sbjct 2007 TAGGAATTTTTTCAATTTCTTGTATAGATCCGTTGTTGTATAAAATAAGATTTTTCATAT 1948 Query 37085 CATTATTCCACATATTTCTACTTATTAGTTCTCTCAATAGGTGTGGATTTACAACCTGAA 37144 | | || ||| | || || | | ||| ||| ||||| |||| || || ||| Sbjct 1947 CTTCATCCCATAAATCGGCTCTGGTCAAATCTGTCAGAAGGTGATGATTCACTACAGGAA 1888 Query 37145 AATCTCCAGATAATACTCTTCTT--GTATATATATTGCTAGTATATGGTTCAATGGACTC 37202 | ||||||||||| ||||||||| ||| || | ||| | ||| | ||||||| ||||| Sbjct 1887 ATTCTCCAGATAAGACTCTTCTTTGGTAAATGT-TTGAT-GTAAAGGGTTCAAAAGACTC 1830 Query 37203 ATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGGCTATT 37262 | | |||| | ||||| | |||||| || || ||||| || |||| | || ||| Sbjct 1829 AGTGTTACCAAGAATTTGTGCTGTAGAGGCGGTTGGCATAGGAGCTAACAATAGAGAATT 1770 Query 37263 TCTCAATCCATGTGTATTAATTCTCTTTTTTAGTTCATTCCAATCCCATAAATCTGTTGG 37322 | ||| |||||| | ||| | | ||| || || ||| ||||| | || || || Sbjct 1769 GCGCAAACCATGTTTTGCTATTTTTTCTTTGAGGGCAGCCCAGTCCCACAGTTCCGTAGG 1710 Query 37323 GTTCTTTAACCACATATCATATTGTAGAATACCTTTACTCGCTGGAGAATCGTTATATGT 37382 | || |||||||||||||||||| ||||||| ||| ||||| | | ||| || Sbjct 1709 AGTTTTGTCCCACATATCATATTGTAGGATACCTTGGCTCACTGGACTCCCTTCATAAGT 1650 Query 37383 CTCATAAGGTCCGTAAATTTTAGCTAGTTCGCAACTAGATTCTAGTGCGGCATAATATAT 37442 || | || | ||| |||| ||| ||||||| ||||| ||| ||||||| || Sbjct 1649 ACTGTATGCACCTTCTTTTTCTGCTAATTCACAACTAGCTTCTAATGCACCATAATAAAT 1590 Query 37443 TGTTTCGAAAATTTGTATATTTAATATTTTTGCTTCTTCGCTATCG-AATGCATAGCCCA 37501 ||||| || |||||| ||| | | | |||||| || || ||| || | || | || Sbjct 1589 AGTTTCAAATATTTGTTGATTAAGGAGTATTGCTTTCTCACTTTCGTAAGGTATT-CTCA 1531 Query 37502 ATAATATAAACACATCAGCCAAACCCTGAACACCGATACCTATGGGTCTATGTTTCTTAT 37561 || | ||| ||| |||| ||||||||||| ||||| || || | || ||| ||| Sbjct 1530 TCAACACAAATGTATCTGCCATTCCCTGAACACCAATACCGATAGGCCGGTGCTTCATAT 1471 Query 37562 TAGATCTAGACGATTCTATCACTGGATAATAATTGATATCTATTATTTTATTTAGATTTT 37621 | || | | ||| || |||||| | || | ||| || | ||| |||| ||||| Sbjct 1470 TTGAAGTTTTTGCTTCAGGGACAGGATAAAAGTTAACATCAATGACTTTGTTTAAATTTT 1411 Query 37622 TAACTAGTATTTTCGTAATTATTCTCAACTTGTCGAACATAAATACGTTATTATTAACAA 37681 | | ||||| || ||| | | || || | || ||||| |||| | ||||| Sbjct 1410 GAGTGACAATTTTTGTGATTTCTTTTAATTTTTTAAAATTAAATTGCTTATGTTCAACAA 1351 Query 37682 ATTTACTCAACGAAATAGATCCTAGATTACATACAGCAACTTCATCTTCGTTACTAAATT 37741 | | | | | || || | ||||| ||||| || ||||||||||| | | ||| Sbjct 1350 ACATGTTAAGTGCTATGGAAGCAAGATTGCATACTGCCACTTCATCTTCTGAAGTGTATT 1291 Query 37742 GTATAATCTCTGTACAGAGATTACTCGATCTAATTGTTCCCAAATTGCTTTGATTGGATT 37801 | | || ||| || || ||||| || || |||| || || | ||| ||||||| | Sbjct 1290 GCACAACCTCAGTGCAAAGATTGCTACATTTAATAGTGCCAAGATTCTTTTGATTACTCT 1231 Query 37802 TTTTATTACAAGAATCTTTATATAGTATATACGGCGTTCCTTGTTCTATTTGAGCCTCGA 37861 | | ||||||| ||| ||||| | || || || || || || | ||| || || | Sbjct 1230 TCCTGTTACAAGCATCCTTATACAACATGTATGGTGTACCAGTCTCCACTTGGGCTTCTA 1171 Query 37862 TAATAGATTTCCATAAACTTCTTG--CTTTAACGATCGCTTTA---Att-tttttCTTTG 37915 |||| || |||||||| ||||| || | || | | |||| || ||||||||| Sbjct 1170 TAATTGACTTCCATAAC--TCTTGAGCTCTGAC--TTGTTTTATAAATCGTTTTTCTTT- 1116 Query 37916 TTTCGTATTCTATATATAATTTGTTAAAATCATTCCCCCATA-CA-TCGCATAATCCTGG 37973 ||| |||| ||||| || | ||| || | | ||||| || || | || || Sbjct 1115 -TTCATATTTGGCATATAGTTCTTCAAACTCCT--CTCCATAGCAGTCAGCGAGACCAGG 1059 Query 37974 ACATTCGCATGGACACATTAGAGACCATTCTTCATCTTTTTCTACGCGTTCCATAAATAA 38033 ||| || |||||||||||| ||| ||||||| |||||||| | || |||||| | Sbjct 1058 ACAGTCATGAGGACACATTAGACTCCAAACTTCATCCTTTTCTACTCTTTTCATAAACAG 999 Query 38034 ATCAGGTACCCATAATGCAGTAAATAAATCTTTGGTTCTATATTCTTCGTTCCCTACATT 38093 ||| |||| |||||| ||| ||| | ||| | | ||| |||||| || ||| || Sbjct 998 ATCTGGTATCCATAAAGCATAAAACAGTTCTCTAGCTCTCATTTCTTCCTTACCTGTGTT 939 Query 38094 CTTTCTTAAGCTTAGAAAATCGAATATATCAGCGTGCCATGGTTCTATATAAATCGACAT 38153 ||| ||||| || || || ||||| || || ||||| || |||| ||||| | | Sbjct 938 CTTCCTTAAATCTAAGAACTCAAATATGTCTGCATGCCAAGGCTCTAAGTAAATTGCAAA 879 Query 38154 TGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAACTGTGTTATTATATATTCT 38213 ||| || || | ||| | || || |||| | |||||| | || || ||||| | ||| Sbjct 878 TGCACCGGGACGTTTGTTTCCACCTTGATCTACATATCTGGCAGTATTGTTATACACTCT 819 Query 38214 TAACATAGGTACTATACCATTAGATTTGCCGTTTATACCGGATATATAAGTACCCTTAGC 38273 ||||| || |||| |||||| || || || | || | |||||||| ||||| || Sbjct 818 CAACATTGGCACTAGACCATTTGAGACCCCATTAGTGCCAGCTATATAAGAACCCTGGGC 759 Query 38274 TCGTATATTACTTATCGACAATCCTATTCCACCTGCATGTTTTGATATTAAAGCGCATTG 38333 || || | | | || ||||| ||||| ||| ||| || |||||||| ||||| Sbjct 758 TCTGATGCAATGTGTATGTAAACCTATGCCACCAGCAGATTTAGAAATTAAAGCACATTG 699 Query 38334 TTTTAACGTATCAAATATACCTTCTATACTGTCATCCTTTATTGGTAGTATAAAACAACT 38393 |||||| |||||||| || ||||| || || || || || || | || | || || Sbjct 698 TTTTAAAGTATCAAAAATGCCTTCAATGCTATCGTCTTTCATAGCTATAAGGAAGCAGGA 639 Query 38394 AGACATTTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCA 38453 || | || ||| || || | || || | |||||| ||||||| | || | Sbjct 638 GGAAAGCTGTGGCCGCGGTGTAGCTGCTGAGAACAGTGTAGGGCTTGCATGTGTAAAATA 579 Query 38454 TTTTTCCGACAAATAATTATATGTTTCTATTACATCATCTATATCACCGCCGTGAATACC 38513 ||| || |||| |||||| || | ||| || ||| || || | |||||||| || Sbjct 578 TTTCTCTGACATCATATTATAAGTATTGATTGCACTATCAATGTCTTCACCGTGAATGCC 519 Query 38514 TAGAGATACCCTCATTAGCATATGTTGTGGTCTTTC 38549 || || || ||||||||||| ||||| |||||||| Sbjct 518 TATGGAGACTCTCATTAGCATGTGTTGAGGTCTTTC 483 >seq49004 Length=3997 Score = 93.3 bits (102), Expect = 4e-14 Identities = 130/182 (71%), Gaps = 3/182 (2%) Strand=Plus/Minus Query 11666 ATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATATA 11725 || |||||||| || || ||||||||||||| ||||||||||| | ||||||||| Sbjct 297 ATAAGTTCATTGCTGAAAGTCAATCCGGGCATCAGACCTCGTTTTTTCAACCAAAATATT 238 Query 11726 GCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCT 11785 | |||||| || || || ||||||||||| || || ||||| || | || | |||| Sbjct 237 GAAGCAAAGCTGCCCGAGAAAAATATTCCCTCAACCGCCGCAAAAGCGATTATACGTTCT 178 Query 11786 CCATAT---ACCTTGTTGCTAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACG 11842 || || || | |||||| ||||| | ||||| || || ||||| || || Sbjct 177 GCAAATGTGGCCGTCTTGCTACCAATCCACTGCAATGCCCAGTCTGCCTTCTTCTTAACA 118 Query 11843 CA 11844 || Sbjct 117 CA 116 >seq52122 Length=5755 Score = 86.0 bits (94), Expect = 6e-12 Identities = 142/200 (71%), Gaps = 9/200 (5%) Strand=Plus/Minus Query 11930 GAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAACACT-G 11988 ||||| | ||||||||| || |||||||| ||||| || || | || || | |||| | Sbjct 5755 GAATGGACATTTTCCATGGCAATTTGAAAACCATAAAAGCACCTGGCTTCGGT-CACTTG 5697 Query 11989 TACATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGATGCAAA 12048 || || | || | ||| | || |||||||| |||||||||||| || ||| || Sbjct 5696 AACCTCTTGTGAGAACCGCTCCACCAAGTTCTCATTAACAATACCATCAGAAGCTGCGAA 5637 Query 12049 AAATGCTAGTATATGTTTTATAAAGTATTTTTC---GTCTTTAGTTAATTTATCCCAATC 12105 ||||||| | ||| || ||||| | ||| || |||| ||||| | |||||||| Sbjct 5636 GAATGCTAAGACATGCTTGATAAAATGTTTCTCACAATCTT---TTAATGTCTCCCAATC 5580 Query 12106 ATCTAAATCTTTTGATAAAT 12125 |||| || | | |||||| Sbjct 5579 TGCTAAGTCCTAT-ATAAAT 5561 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 466441381489040