Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neruda_20aoede_20[genbank_20GCA_5F900068225.1_202017-04-25] 355,741 sequences; 337,370,441 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq7548 524 1e-143 seq139650 91.5 2e-13 seq52122 86.0 8e-12 >seq7548 Length=2633 Score = 524 bits (580), Expect = 1e-143 Identities = 1100/1621 (68%), Gaps = 43/1621 (3%) Strand=Plus/Minus Query 64821 ATTTTATCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAG 64880 |||||| | ||||| | ||||| || || | | | ||| ||||| || |||| ||| Sbjct 2257 ATTTTACCTTTGTCTACGGTGAACTGTATAGCATTTGCTGCCGGTTTTGTGCGTAAGTAG 2198 Query 64881 TACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAA 64940 |||||||| ||||||| || | |||| ||| ||||| || ||||||||| | Sbjct 2197 TACATTCCTGTTTTTAAGCCCATTTTCCAAGCGTGGAAATGAATCGACGTTAGTTTCCCA 2138 Query 64941 TAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTG 65000 || | || | || | ||| || || | |||||||||||| || ||||| ||||| || Sbjct 2137 TAGTTAGGCTTAGCAACATGTATGTTAAAAGATTGACTTTGGTCTATGAAAGCTCCTCTA 2078 Query 65001 TCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACTCG 65059 || || ||||||| |||| ||| || || ||| ||||| | ||||| || || || Sbjct 2077 TCAGCCGCCATTTGTATGGACGTTTTCAATGAAATCTCCCATACGGTTTTGTACAAATCT 2018 Query 65060 CTTAATATCTTCTGGAAGGTTTGTA--TTCT-GAATGGATCCACCATCTGCCATAATCCT 65116 |||| | |||| |||| ||| | |||| | || ||||| | | ||| Sbjct 2017 CTTATT-TCTTTAGGAATTTTTTCAATTTCTTGTATAGATCCGTTGTTGTATAAAATAAG 1959 Query 65117 ATTCTTGATCTCATCATTCCATAATTTT-CTCTCGGTTAAAACTCTAAGGAGATGCGGAT 65175 ||| || || || |||| |||||| | |||| ||| ||| || | || || || ||| Sbjct 1958 ATTTTTCATATCTTCATCCCATAAATCGGCTCT-GGTCAAATCTGTCAGAAGGTGATGAT 1900 Query 65176 TAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTT 65235 | ||||| ||||||||||||| || ||||| | |||||| || ||| | |||| Sbjct 1899 TCACTACAGGAAATTCTCCAGATAAGACTCTTCTTTGGTAAATGTTTGATGTAAAGGGTT 1840 Query 65236 CCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCA 65295 | | ||||||| | || || | |||||| || || || || || |||||||| || | || Sbjct 1839 CAAAAGACTCAGTGTTACCAAGAATTTGTGCTGTAGAGGCGGTTGGCATAGGAGCTAACA 1780 Query 65296 ATAAACTATTTCTAAGACCGTATGTTCTG--ATTTTATCTTTTAGAGGTTCCCAATTCCA 65353 ||| | ||| | | ||| ||||| || ||||| ||||| || | |||| | ||| Sbjct 1779 ATAGAGAATTGCGCAAACC--ATGTTTTGCTATTTTTTCTTTGAGGGCAGCCCAGTCCCA 1722 Query 65354 AAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGC-GTACG 65412 || |||| || |||||| ||||| | || | | || Sbjct 1721 CAGTTCCGTAGGAGTTTTGTCCCACATATCATATTGTAGGATACCTTGGCTCACTGGACT 1662 Query 65413 ATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATG 65472 ||| |||| ||| ||||| ||||| || || |||| ||||||||| || ||||||| Sbjct 1661 C-CCTTCATAAGTACTGTATGCACCTTCTTTTTCTGCTAATTCACAACTAGCTTCTAATG 1603 Query 65473 CACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAA 65532 |||| |||||||| ||||| || || | | ||| || | ||||| | || || Sbjct 1602 CACCATAATAAATAGTTTCAAATATTTGTTGATTAAGGAGTATTGCTTTCTCACTTTCGT 1543 Query 65533 ATGGATAATTTAAGAGA-ATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGT 65591 | || || | | | | | ||| | ||||| | ||| |||||||||||||||||||| Sbjct 1542 AAGG-TATTCTCATCAACACAAATGTATCTGCCATTCCCTGAACACCAATACCGATAGGC 1484 Query 65592 CTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATT 65651 | || || |||| || ||| ||||| || | ||||||| | |||| ||| || | | Sbjct 1483 CGGTGCTTCATATTTGAAGTTTTTGCTTCAGGGACAGGATAAAAGTTAACATCAATGACT 1424 Query 65652 TTATTGAGATTTC---TGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAAT 65708 || || | |||| |||||||| | ||| || || | ||| ||||| |||| Sbjct 1423 TTGTTTAAATTTTGAGTGACAATTTTTGTGATT---TCTTTTAATTTTTTAAAATTAAAT 1367 Query 65709 CGCTCATCTATTACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCA 65768 ||| || | ||||||||||| | ||| | || || ||||| || || || || ||| Sbjct 1366 TGCTTATGTTCAACAAACATGTTAAGTGCTATGGAAGCAAGATTGCATACTGCCACTTCA 1307 Query 65769 TTAGCATCCGCA---TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCT 65825 | | || | | ||||| | | ||||||||||||||| ||||| || || || || Sbjct 1306 T---CTTCTGAAGTGTATTGCACAACCTCAGTGCAAAGATTGCTACATTTAATAGTGCCA 1250 Query 65826 AAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCA 65885 | ||| | |||||||||||| ||||||| ||||||||||| | ||| |||| |||||| Sbjct 1249 AGATTCTTTTGATTACTCTTCCTGTTACAAGCATCCTTATACAACATGTATGGTGTACCA 1190 Query 65886 GTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTG 65945 || || | || | ||||||||| | ||||| | || |||| | | | | ||| Sbjct 1189 GTCTCCACTTGGGCTTCTATAATTGACTTCCATAACTCTTGAGCTCTGACTT--GTTTTA 1132 Query 65946 TATCTC--TTTTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACAT 66003 || || |||||| |||| ||| | ||| | | ||| ||||| ||||| | | Sbjct 1131 TAAATCGTTTTTCTTTTTCATATTTGGCATATAGTTCTTCAAACTCCTCTCCATAGCAGT 1072 Query 66004 TGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTC---A 66060 | | |||||||| |||| |||||||| | ||| || |||||||| | Sbjct 1071 CAGCGAGACCAGGACAGTCATGAGGACACATTAGACTCCAAACT---TCATCCTTTTCTA 1015 Query 66061 CTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGTT 66120 ||| ||||||||| ||||| || ||||| | ||| ||| | ||||| | ||| || Sbjct 1014 CTCTTTTCATAAACAGATCTGGTATCCATAAAGCATAAAACAGTTCTCTAGCTCTCATTT 955 Query 66121 CCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTT 66180 | || || ||||| ||||| | | ||| | |||| | | || || |||||| || | Sbjct 954 CTTCCTTACCTGTGTTCTTCCTTAAATCTAAGAACTCAAATATGTCTGCATGCCAAGGCT 895 Query 66181 CCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGG 66240 | ||||| || || | | || || ||||||||||| || ||||||| ||||| || | Sbjct 894 CTAAGTAAATTGCAAATGCACCGGGACGTTTGTTTCCACCTTGATCTACATATCTGGCAG 835 Query 66241 TGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGA 66300 | || ||||| |||||||||||||| | | |||||| || ||||| || || | | Sbjct 834 TATTGTTATACACTCTCAACATTGGCACTAGACCATTTGAGACCCCATTAGTGCCAGCTA 775 Query 66301 TATAGCTTCCACTTGCACGAAT---ATTACTAATTGATAGACCTATTCCCCCTGCCATTT 66357 |||| || || | || || || || || |||||| || || || || Sbjct 774 TATAAGAACCCTGGGCTCTGATGCAATGTGTA--TG-TAAACCTATGCCACCAGCAGATT 718 Query 66358 TAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCA 66417 |||| ||||| || ||| ||||||| |||||| | ||||| || || ||||| || ||| Sbjct 717 TAGAAATTAAAGCACATTGTTTTAAAGTATCAAAAATGCCTTCAATGCTATCGTCTTTCA 658 Query 66418 T 66418 | Sbjct 657 T 657 Score = 96.9 bits (106), Expect = 5e-15 Identities = 88/111 (79%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 66599 CTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA 66658 ||| |||||||| || ||||| || ||| ||||||||||||| ||||||||||||||||| Sbjct 210 CTTATTGTTTATCTTTAACAAATATGATCTTTCCAAAGTTTTGAAACCAAAATAGTTGTA 151 Query 66659 TGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTT 66709 | ||| |||| || |||| ||| | |||| | ||| ||||| | ||| Sbjct 150 TTTAAAATCTCTGTCATAAACAATGGCAGAGTCCAATTTGTCCTTGTTTTT 100 >seq139650 Length=2376 Score = 91.5 bits (100), Expect = 2e-13 Identities = 243/369 (66%), Gaps = 7/369 (2%) Strand=Plus/Minus Query 158443 TTATGACTCCA--ATTAATCCCATGTTAGCGGAATCGTGTGATTCTGTCAATAAGGCATT 158500 ||||||||||| |||| || |||||||| ||| | || | || || | | ||| | Sbjct 489 TTATGACTCCAGTATTA--CCTATGTTAGCTGAAGCTTGCAAGTCGGTTGAAATGGCTAT 432 Query 158501 TAAAAAATTTCCATCAGGAATGTTTGCTGAAGTCAAATACGATGGCGAGAGAGTACAAGT 158560 ||||||| |||| || |||||| ||||| | ||||| ||||| || | || ||||| Sbjct 431 GAAAAAATGTCCAAATGGCATGTTTTCTGAAATAAAATATGATGGAGAACGGGTTCAAGT 372 Query 158561 TCATAAAAATAATAACGAGTTTGCCTTCTTTAGTAGAAACATGAAACCAGTACTCTCTCA 158620 |||||||| || ||||| | ||| | | | ||||||||| | |||| Sbjct 371 CCATAAAAAGGGAAATGAGTTCAAATATTTTTCCCGTGCCTTAAAACCAGTAATGGCTCA 312 Query 158621 TAAAGTGGATTATCTCAAAGAATACATACCGAAAGCATTTAAAAAAGCTACGTCTATCGT 158680 ||||| | || | ||||| || |||| || |||||| |||| | | | Sbjct 311 CAAAGTTAGTCATTTTAAAGATTATTTACCTAAGGCATTTCCTAAAGGAGATGATTTGAT 252 Query 158681 ATTGGATTCTGAAATTGTTCTTGTAGACGAACATAATGTA---CCGCTCCCGTTTGGAAG 158737 |||||| ||||| | || | ||||| | ||| || | || | || ||||| | Sbjct 251 TTTGGATGCTGAAGTACTTATGGTAGATGTCAATACTGGAAAGCCATTGCCTTTTGGTAC 192 Query 158738 TTTAGGTATACACAAAAAGAAAGAATATAAAAACTCTAACATGTGTTTGTTCGTGTTTGA 158797 |||||||| |||||| | ||||| |||| | || | | ||||| | | ||||| Sbjct 191 ATTAGGTATCCACAAACAATCAGAATTTAAAGATGCTCAAGTTTGTTTATATATATTTGA 132 Query 158798 CTGTTTGTA 158806 || || || Sbjct 131 TTGCTTATA 123 >seq52122 Length=5755 Score = 86.0 bits (94), Expect = 8e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 36644 TTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTC 36703 ||||||| || |||||||| | |||||||| ||||| || || ||||||||||| | | Sbjct 5436 TTAGATAAGTCTACTTCTTCTGCAGTCCAAAAGGATGCTTCAGCTTTTTTATACATCTGC 5377 Query 36704 CAGATGTCATGATATTGAATTGGAAAAATAACAAA 36738 || ||||| ||||||| ||||| || ||||| || Sbjct 5376 CAAATGTCTGGATATTGGATTGGGAATATAACGAA 5342 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 655246061874440